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IGVFDS3171OFHP

released
File Set Type
experimental data
Summary
CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
Assay Term
in vitro CRISPR screen using single-cell RNA-seq
Sample Summaries
  • Homo sapiens (male) HCT116 cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library
Protocols
Aliases
jesse-engreitz:measurement_CRUDO_TAPseq-Auxin0hrs-Rep1
Attribution
Jesse Engreitz, Stanford

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
R1
1
1
1.2 GB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
1
369 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
4
2.8 GB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
2
1.2 GB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
2
2.7 GB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
3
375 MB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
2
362 MB
Jesse Engreitz, Stanford
validated
fastq
reads
R2
1
3
2.8 GB
Jesse Engreitz, Stanford
validated
fastq
reads
R1
1
4
1.2 GB
Jesse Engreitz, Stanford
validated
fastq
reads
I1
1
4
371 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
InVitroSystem
Homo sapiens (male) HCT116 cell line modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Donors

1 item
Accession
Aliases
Sex
Taxa
  • igvf:donor_of_HCT116
male
Homo sapiens

Associated Construct Library Sets

1 item
Accession
Summary
Library Design Files
guide (sgRNA) library targeting accessible genome regions in 29 genomic loci

Auxiliary Datasets

1 item
Accession
Type
Summary
Files
Aliases
Lab
AuxiliarySet
gRNA sequencing for CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci
  • jesse-engreitz:auxiliary_CRUDO_TAPseq-Auxin0hrs-Rep1
Jesse Engreitz, Stanford

Documents

1 item
Page
Description
Type
Download
Standardized File Format
Preview
overview of experimental design
experimental protocol