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INDEXED
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MeasurementSet
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IGVFDS2800PFJK
IGVFDS2800PFJK
released
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Homo sapiens (male, 49 years) bone marrow cell (cellular sub pool: SS-PKR 1)
Protocols
https://www.protocols.io/view/share-seq-v1-bmbik2ke
Aliases
bradley-bernstein:scRNA Lib 4
buenrostro-bernstein:scRNA Lib 4
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0000TUAG
fastq
reads
R1
2340
Illumina NovaSeq 6000
410 MB
Jason Buenrostro, Broad
validated
IGVFFI0621WLJS
fastq
reads
R1
1574
Illumina NovaSeq 6000
473 MB
Jason Buenrostro, Broad
validated
IGVFFI1596ADCL
fastq
reads
R2
2340
Illumina NovaSeq 6000
992 MB
Jason Buenrostro, Broad
validated
IGVFFI2907GNAY
fastq
reads
R2
2532
Illumina NovaSeq 6000
966 MB
Jason Buenrostro, Broad
validated
IGVFFI4743OXVL
fastq
reads
R2
2244
Illumina NovaSeq 6000
993 MB
Jason Buenrostro, Broad
validated
IGVFFI5019EBKE
fastq
reads
R1
2532
Illumina NovaSeq 6000
398 MB
Jason Buenrostro, Broad
validated
IGVFFI5039POUD
fastq
reads
R1
1382
Illumina NovaSeq 6000
482 MB
Jason Buenrostro, Broad
validated
IGVFFI5808NUSR
fastq
reads
R2
1478
Illumina NovaSeq 6000
1.3 GB
Jason Buenrostro, Broad
validated
IGVFFI6062HITM
fastq
reads
R1
1478
Illumina NovaSeq 6000
488 MB
Jason Buenrostro, Broad
validated
IGVFFI6314UOXD
fastq
reads
R2
1574
Illumina NovaSeq 6000
1.3 GB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM2774PKYK
PrimaryCell
bone marrow
Homo sapiens (male, 49 years) bone marrow cell (cellular sub pool: SS-PKR 1)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO8549ATSE
bradley-bernstein:Donor 1511
buenrostro-bernstein:Donor 1511
male
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5278IBSB
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
buenrostro-bernstein:human-bone-marrow-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS1138LJOC
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
bradley-bernstein:scATAC Lib 4
buenrostro-bernstein:scATAC Lib 4
Jason Buenrostro, Broad