{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2800PFJK",
"aliases": [
"bradley-bernstein:scRNA Lib 4",
"buenrostro-bernstein:scRNA Lib 4"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
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"INTERNAL_ACTION": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS2800PFJK](/measurement-sets/IGVFDS2800PFJK/) has sequence file(s): [IGVFFI5039POUD](/sequence-files/IGVFFI5039POUD/), [IGVFFI8809UUZA](/sequence-files/IGVFFI8809UUZA/), [IGVFFI6062HITM](/sequence-files/IGVFFI6062HITM/), [IGVFFI5808NUSR](/sequence-files/IGVFFI5808NUSR/), [IGVFFI7861NECY](/sequence-files/IGVFFI7861NECY/), [IGVFFI7512UDWA](/sequence-files/IGVFFI7512UDWA/), [IGVFFI0621WLJS](/sequence-files/IGVFFI0621WLJS/), [IGVFFI7369KFAM](/sequence-files/IGVFFI7369KFAM/), [IGVFFI1596ADCL](/sequence-files/IGVFFI1596ADCL/), [IGVFFI9739TXQL](/sequence-files/IGVFFI9739TXQL/), [IGVFFI6314UOXD](/sequence-files/IGVFFI6314UOXD/), [IGVFFI4743OXVL](/sequence-files/IGVFFI4743OXVL/), [IGVFFI7797YQJX](/sequence-files/IGVFFI7797YQJX/), [IGVFFI0000TUAG](/sequence-files/IGVFFI0000TUAG/), [IGVFFI2907GNAY](/sequence-files/IGVFFI2907GNAY/), [IGVFFI5019EBKE](/sequence-files/IGVFFI5019EBKE/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS2800PFJK/"
},
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM2774PKYK](/primary-cells/IGVFSM2774PKYK/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM2774PKYK/"
}
],
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{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS2800PFJK](/measurement-sets/IGVFDS2800PFJK/) has an `assay_term` of single-cell RNA sequencing assay but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS2800PFJK/"
}
]
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},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"aliases": [
"bradley-bernstein:BioSam 4566_SS-PKR 1",
"buenrostro-bernstein:BioSam 4566_SS-PKR 1"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 1), male, Homo sapiens (49 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:35:46.770282+00:00",
"summary": "single-cell RNA sequencing assay (SHARE-seq)",
"uuid": "1778ccb3-dcc2-40e5-b77e-8acb7a0af343"
}