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IGVFDS2606ZOFX

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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell; ... and 18 more samples
Protocols
Aliases
jimmie-ye:XX14-SC4_snRNA

Sequencing Results (Illumina)

12 items
Read Names
fastq
reads
R1
202
Read 1
6.1 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
202
1.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
I2
201
1.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
201
Read 2
10 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
202
Read 2
10.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
203
1.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
R1
201
Read 1
6.3 GB
Jimmie Ye, UCSF
validated
fastq
reads
R2
203
Read 2
10.0 GB
Jimmie Ye, UCSF
validated
fastq
reads
I1
201
1.2 GB
Jimmie Ye, UCSF
validated
fastq
reads
I2
202
1.3 GB
Jimmie Ye, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell; ... and 18 more samples

Donors

20 items
Aliases
  • jimmie-ye:donor_196
female
Homo sapiens
  • jimmie-ye:donor_241
male
Homo sapiens
  • jimmie-ye:donor_276
male
Homo sapiens
  • jimmie-ye:donor_225
female
Homo sapiens
  • jimmie-ye:donor_259
female
Homo sapiens
  • jimmie-ye:donor_251
male
Homo sapiens
  • jimmie-ye:donor_67
female
Homo sapiens
  • jimmie-ye:donor_255
male
Homo sapiens
  • jimmie-ye:donor_249
female
Homo sapiens
  • jimmie-ye:donor_237
female
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • jimmie-ye:XX14-SC4_snATAC
Jimmie Ye, UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Jimmie Ye, UCSF