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"content_type": "seqspec",
"creation_timestamp": "2025-03-29T11:26:44.272776+00:00",
"file_format": "yaml",
"file_size": 1526,
"href": "/configuration-files/IGVFFI6684PBLY/@@download/IGVFFI6684PBLY.yaml.gz",
"s3_uri": "s3://igvf-files/2025/03/29/ceb7d514-dced-40ab-b16f-32cdbbb15454/IGVFFI6684PBLY.yaml.gz",
"status": "in progress",
"submitted_file_name": "dat/processed/igvf_submit/seqspecs/XX14-SC4_snRNA_S1.yaml.gz",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS3412IOIN/"
],
"lab": {
"@id": "/labs/jimmie-ye/",
"title": "Jimmie Ye, UCSF"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI8751YQRY/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome",
"protocols": [
"https://www.protocols.io/view/multi-seq-for-multiome-igvf-round-2-experiment-1-dfqp3mvn"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS6323NFTV/",
"accession": "IGVFDS6323NFTV",
"status": "preview"
}
],
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM9745CPOX/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM9745CPOX",
"aliases": [
"jimmie-ye:XX14-SC4"
],
"classifications": [
"primary cell",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [
{
"@id": "/institutional-certificates/d81b266e-6bb3-479e-a738-3d6bf33a6c16/",
"certificate_identifier": "IP115-26",
"controlled_access": true,
"data_use_limitation": "GRU",
"status": "in progress"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_2000001/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "peripheral blood mononuclear cell",
"term_name": "peripheral blood mononuclear cell"
}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (male, 24.0 years) peripheral blood mononuclear cell; Homo sapiens (male, 52.0 years) peripheral blood mononuclear cell; ... and 18 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
"@id": "/users/6df823a5-62f2-4562-94ba-e9285afcfcf4/",
"title": "Marcus Alvarez"
},
"submitted_files_timestamp": "2025-03-10T21:04:04.306374+00:00",
"summary": "single-nucleus RNA sequencing assay (10x multiome)",
"uuid": "d7a97e8c-17fe-4c1a-8d21-da30c420561a"
}