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IGVFDS2225MFRS

released
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples
Protocols
Aliases
ali-mortazavi:004_67C_illumina
Attribution
Ali Mortazavi, UCI

Sequencing Results (Illumina)

16 items
Read Names
fastq
reads
R1
2
Read 1
HTH33DSX5
2
14 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
8
Read 2
HTGM5DSX5
4
7.0 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
1
Read 2
HTH33DSX5
1
6.9 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
7
Read 2
HTGM5DSX5
3
7.0 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
3
Read 2
HTH33DSX5
3
6.9 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
3
Read 1
HTH33DSX5
3
14 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
7
Read 1
HTGM5DSX5
3
13 GB
Ali Mortazavi, UCI
validated
fastq
reads
R1
8
Read 1
HTGM5DSX5
4
13 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
6
Read 2
HTGM5DSX5
2
7.1 GB
Ali Mortazavi, UCI
validated
fastq
reads
R2
5
Read 2
HTGM5DSX5
1
7.0 GB
Ali Mortazavi, UCI
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples

Donors

64 items
Aliases
  • ali-mortazavi:018_B6J_10F
female
Mus musculus
  • ali-mortazavi:041_129S1J_10M
male
Mus musculus
  • ali-mortazavi:030_AJ_10F
female
Mus musculus
  • ali-mortazavi:052_NZOJ_10F
female
Mus musculus
  • ali-mortazavi:057_WSBJ_10M
male
Mus musculus
  • ali-mortazavi:080_PWKJ_10F
female
Mus musculus
  • ali-mortazavi:069_NODJ_10M
male
Mus musculus
  • ali-mortazavi:058_WSBJ_10F
female
Mus musculus
  • ali-mortazavi:035_AJ_10M
male
Mus musculus
  • ali-mortazavi:088_CASTJ_10F
female
Mus musculus

Assay Details

Sequencing Library Types
mRNA enriched

File Sets Using This Measurement Set as an Input

1 item
Accession
Type
Summary
Aliases
Lab
AnalysisSet
Parse SPLiT-seq: sparse gene count matrix
  • ali-mortazavi:igvf_004_Subpool_4_total+core
Ali Mortazavi, UCI