{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS2225MFRS/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS2225MFRS",
"aliases": [
"ali-mortazavi:004_67C_illumina"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"assay_slims": [
"gene expression"
],
"status": "released",
"term_name": "single-nucleus RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS2225MFRS](/measurement-sets/IGVFDS2225MFRS/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS2225MFRS/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS2225MFRS](/measurement-sets/IGVFDS2225MFRS/) has in progress subobject tabular file [IGVFFI1138MCVX](/tabular-files/IGVFFI1138MCVX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS2225MFRS/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS2225MFRS](/measurement-sets/IGVFDS2225MFRS/) has in progress subobject tabular file [IGVFFI2591OFQO](/tabular-files/IGVFFI2591OFQO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS2225MFRS/"
},
{
"category": "mismatched status",
"detail": "Released multiplexed sample [IGVFSM2909LQXK](/multiplexed-samples/IGVFSM2909LQXK/) has in progress subobject tabular file [IGVFFI6237SLBZ](/tabular-files/IGVFFI6237SLBZ/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/multiplexed-samples/IGVFSM2909LQXK/"
},
{
"category": "missing publication",
"detail": "Multiplexed sample [IGVFSM2909LQXK](/multiplexed-samples/IGVFSM2909LQXK/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/multiplexed-samples/IGVFSM2909LQXK/"
}
]
},
"award": {
"@id": "/awards/HG012077/",
"component": "mapping",
"contact_pi": {
"@id": "/users/2c33e192-e815-4384-a220-72a0992cbe24/",
"title": "Ali Mortazavi"
},
"title": "Center for Mouse Genomic Variation at Single Cell Resolution"
},
"control_for": [],
"creation_timestamp": "2023-10-05T18:13:19.179434+00:00",
"data_use_limitation_summaries": [
"no certificate"
],
"donors": [
{
"@id": "/rodent-donors/IGVFDO6607QZPA/",
"accession": "IGVFDO6607QZPA",
"aliases": [
"ali-mortazavi:050_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0430HQIU/",
"accession": "IGVFDO0430HQIU",
"aliases": [
"ali-mortazavi:041_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3436ZMLY/",
"accession": "IGVFDO3436ZMLY",
"aliases": [
"ali-mortazavi:091_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5177QEWF/",
"accession": "IGVFDO5177QEWF",
"aliases": [
"ali-mortazavi:063_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6066JIEJ/",
"accession": "IGVFDO6066JIEJ",
"aliases": [
"ali-mortazavi:043_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6141KSSQ/",
"accession": "IGVFDO6141KSSQ",
"aliases": [
"ali-mortazavi:024_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5502NJPS/",
"accession": "IGVFDO5502NJPS",
"aliases": [
"ali-mortazavi:038_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0696DMIA/",
"accession": "IGVFDO0696DMIA",
"aliases": [
"ali-mortazavi:057_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8958JQIY/",
"accession": "IGVFDO8958JQIY",
"aliases": [
"ali-mortazavi:047_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5523UFUN/",
"accession": "IGVFDO5523UFUN",
"aliases": [
"ali-mortazavi:070_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3207TERA/",
"accession": "IGVFDO3207TERA",
"aliases": [
"ali-mortazavi:086_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7062NBTQ/",
"accession": "IGVFDO7062NBTQ",
"aliases": [
"ali-mortazavi:079_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3603MEIO/",
"accession": "IGVFDO3603MEIO",
"aliases": [
"ali-mortazavi:084_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6219LVKW/",
"accession": "IGVFDO6219LVKW",
"aliases": [
"ali-mortazavi:032_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2831PZHE/",
"accession": "IGVFDO2831PZHE",
"aliases": [
"ali-mortazavi:077_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8152XDDC/",
"accession": "IGVFDO8152XDDC",
"aliases": [
"ali-mortazavi:090_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2301HIUQ/",
"accession": "IGVFDO2301HIUQ",
"aliases": [
"ali-mortazavi:067_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0853BCOL/",
"accession": "IGVFDO0853BCOL",
"aliases": [
"ali-mortazavi:058_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1643VEDI/",
"accession": "IGVFDO1643VEDI",
"aliases": [
"ali-mortazavi:019_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9340WGNV/",
"accession": "IGVFDO9340WGNV",
"aliases": [
"ali-mortazavi:037_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0624KKTV/",
"accession": "IGVFDO0624KKTV",
"aliases": [
"ali-mortazavi:030_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7255VZBN/",
"accession": "IGVFDO7255VZBN",
"aliases": [
"ali-mortazavi:062_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0681EHNP/",
"accession": "IGVFDO0681EHNP",
"aliases": [
"ali-mortazavi:052_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4788BIQB/",
"accession": "IGVFDO4788BIQB",
"aliases": [
"ali-mortazavi:020_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2319OUEC/",
"accession": "IGVFDO2319OUEC",
"aliases": [
"ali-mortazavi:045_129S1J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5872DFML/",
"accession": "IGVFDO5872DFML",
"aliases": [
"ali-mortazavi:094_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7254QNQZ/",
"accession": "IGVFDO7254QNQZ",
"aliases": [
"ali-mortazavi:031_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7951JDSP/",
"accession": "IGVFDO7951JDSP",
"aliases": [
"ali-mortazavi:026_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9374WXKK/",
"accession": "IGVFDO9374WXKK",
"aliases": [
"ali-mortazavi:028_AJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9890MXGN/",
"accession": "IGVFDO9890MXGN",
"aliases": [
"ali-mortazavi:068_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3762EAWT/",
"accession": "IGVFDO3762EAWT",
"aliases": [
"ali-mortazavi:076_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0751WQHI/",
"accession": "IGVFDO0751WQHI",
"aliases": [
"ali-mortazavi:080_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5539RLXJ/",
"accession": "IGVFDO5539RLXJ",
"aliases": [
"ali-mortazavi:029_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7957DMLJ/",
"accession": "IGVFDO7957DMLJ",
"aliases": [
"ali-mortazavi:033_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6112GRYR/",
"accession": "IGVFDO6112GRYR",
"aliases": [
"ali-mortazavi:059_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2292YGGE/",
"accession": "IGVFDO2292YGGE",
"aliases": [
"ali-mortazavi:049_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7610XXRR/",
"accession": "IGVFDO7610XXRR",
"aliases": [
"ali-mortazavi:072_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9199TPBC/",
"accession": "IGVFDO9199TPBC",
"aliases": [
"ali-mortazavi:071_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1452VDIT/",
"accession": "IGVFDO1452VDIT",
"aliases": [
"ali-mortazavi:035_AJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "A/J (AJ)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4707SGWM/",
"accession": "IGVFDO4707SGWM",
"aliases": [
"ali-mortazavi:051_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5258MBVH/",
"accession": "IGVFDO5258MBVH",
"aliases": [
"ali-mortazavi:040_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2106EEWB/",
"accession": "IGVFDO2106EEWB",
"aliases": [
"ali-mortazavi:078_PWKJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9510ILZG/",
"accession": "IGVFDO9510ILZG",
"aliases": [
"ali-mortazavi:053_NZOJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO2645GUSC/",
"accession": "IGVFDO2645GUSC",
"aliases": [
"ali-mortazavi:060_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0813DZTW/",
"accession": "IGVFDO0813DZTW",
"aliases": [
"ali-mortazavi:069_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9202WGJZ/",
"accession": "IGVFDO9202WGJZ",
"aliases": [
"ali-mortazavi:085_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1477BPVO/",
"accession": "IGVFDO1477BPVO",
"aliases": [
"ali-mortazavi:088_CASTJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3640WUBU/",
"accession": "IGVFDO3640WUBU",
"aliases": [
"ali-mortazavi:066_NODJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5737FRWD/",
"accession": "IGVFDO5737FRWD",
"aliases": [
"ali-mortazavi:081_PWKJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "PWK/PhJ (PWK)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8904OIIT/",
"accession": "IGVFDO8904OIIT",
"aliases": [
"ali-mortazavi:044_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9142EUBJ/",
"accession": "IGVFDO9142EUBJ",
"aliases": [
"ali-mortazavi:096_WSBJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO7007WBAX/",
"accession": "IGVFDO7007WBAX",
"aliases": [
"ali-mortazavi:016_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5183UZGS/",
"accession": "IGVFDO5183UZGS",
"aliases": [
"ali-mortazavi:021_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3655FKMR/",
"accession": "IGVFDO3655FKMR",
"aliases": [
"ali-mortazavi:025_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4725SNCJ/",
"accession": "IGVFDO4725SNCJ",
"aliases": [
"ali-mortazavi:017_B6J_10M"
],
"sex": "male",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO0026YRCR/",
"accession": "IGVFDO0026YRCR",
"aliases": [
"ali-mortazavi:018_B6J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "C57BL/6J (B6)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO1744FDIX/",
"accession": "IGVFDO1744FDIX",
"aliases": [
"ali-mortazavi:036_129S1J_10F"
],
"sex": "female",
"status": "released",
"strain_background": "129S1/SvImJ (129)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO6614NNPY/",
"accession": "IGVFDO6614NNPY",
"aliases": [
"ali-mortazavi:089_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO4469VYEZ/",
"accession": "IGVFDO4469VYEZ",
"aliases": [
"ali-mortazavi:073_NODJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "NOD/ShiLtJ (NOD)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO5085MJSP/",
"accession": "IGVFDO5085MJSP",
"aliases": [
"ali-mortazavi:048_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO8322VYDU/",
"accession": "IGVFDO8322VYDU",
"aliases": [
"ali-mortazavi:093_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO9560CEGZ/",
"accession": "IGVFDO9560CEGZ",
"aliases": [
"ali-mortazavi:061_WSBJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "WSB/EiJ (WSB)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3662UKFW/",
"accession": "IGVFDO3662UKFW",
"aliases": [
"ali-mortazavi:087_CASTJ_10M"
],
"sex": "male",
"status": "released",
"strain_background": "CAST/EiJ (CAST)",
"taxa": "Mus musculus"
},
{
"@id": "/rodent-donors/IGVFDO3534MDFF/",
"accession": "IGVFDO3534MDFF",
"aliases": [
"ali-mortazavi:046_NZOJ_10F"
],
"sex": "female",
"status": "released",
"strain_background": "NZO/H1LtJ (NZO)",
"taxa": "Mus musculus"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI8910ICXB/",
"accession": "IGVFFI8910ICXB",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T21:39:24.494649+00:00",
"file_format": "fastq",
"file_size": 13720663889,
"href": "/sequence-files/IGVFFI8910ICXB/@@download/IGVFFI8910ICXB.fastq.gz",
"md5sum": "1ae43c9897223dbb15ff3e2b0fa53008",
"s3_uri": "s3://igvf-files/2023/10/05/e9126c75-9178-4b69-8b22-4711f53f484d/IGVFFI8910ICXB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B04_D_nova_N1_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7332PZXC/",
"accession": "IGVFFI7332PZXC",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:13:14.678936+00:00",
"file_format": "fastq",
"file_size": 13547852677,
"href": "/sequence-files/IGVFFI7332PZXC/@@download/IGVFFI7332PZXC.fastq.gz",
"md5sum": "58b5ad20d04cca18a4f9b90e1445c1b4",
"s3_uri": "s3://igvf-files/2023/10/05/57b4becd-12d6-450d-b5b4-d994dfdd8b63/IGVFFI7332PZXC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B04_D_nova_N1_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0996IWUV/",
"accession": "IGVFFI0996IWUV",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T23:01:46.396403+00:00",
"file_format": "fastq",
"file_size": 6984749070,
"href": "/sequence-files/IGVFFI0996IWUV/@@download/IGVFFI0996IWUV.fastq.gz",
"md5sum": "04d1c0ae847002c8242887a41549a435",
"s3_uri": "s3://igvf-files/2023/10/05/97113326-51df-4ce1-85a3-78e3ed662f94/IGVFFI0996IWUV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B04_D_nova_N2_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5820VFYB/",
"accession": "IGVFFI5820VFYB",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:41:37.650847+00:00",
"file_format": "fastq",
"file_size": 7094950082,
"href": "/sequence-files/IGVFFI5820VFYB/@@download/IGVFFI5820VFYB.fastq.gz",
"md5sum": "0a2b70b7943256441a6a5be216a601e3",
"s3_uri": "s3://igvf-files/2023/10/05/6333066e-9b1f-40ba-b42d-7b27f031f4e2/IGVFFI5820VFYB.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B04_D_nova_N2_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4297EFRE/",
"accession": "IGVFFI4297EFRE",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:45:16.610365+00:00",
"file_format": "fastq",
"file_size": 13244151814,
"href": "/sequence-files/IGVFFI4297EFRE/@@download/IGVFFI4297EFRE.fastq.gz",
"md5sum": "c3b2ea8f0975233864a5a88932c767b2",
"s3_uri": "s3://igvf-files/2023/10/05/a27175ae-5ab1-4037-9559-d56e71e726dd/IGVFFI4297EFRE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B04_D_nova_N2_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6408DHWW/",
"accession": "IGVFFI6408DHWW",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:34:44.720863+00:00",
"file_format": "fastq",
"file_size": 13408845905,
"href": "/sequence-files/IGVFFI6408DHWW/@@download/IGVFFI6408DHWW.fastq.gz",
"md5sum": "99a51eabb1235e0f9aee6c600e71f56a",
"s3_uri": "s3://igvf-files/2023/10/05/c5bd5557-5921-4b19-b100-62eb494647d1/IGVFFI6408DHWW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B04_D_nova_N2_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1411UUXD/",
"accession": "IGVFFI1411UUXD",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T21:47:23.356019+00:00",
"file_format": "fastq",
"file_size": 6910438109,
"href": "/sequence-files/IGVFFI1411UUXD/@@download/IGVFFI1411UUXD.fastq.gz",
"md5sum": "f01181fa31093a024ad42e6237babe8d",
"s3_uri": "s3://igvf-files/2023/10/05/10b75e44-f289-4401-8cb9-7c3837030be3/IGVFFI1411UUXD.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B04_D_nova_N1_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9051PCFO/",
"accession": "IGVFFI9051PCFO",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T21:58:33.174476+00:00",
"file_format": "fastq",
"file_size": 6932524348,
"href": "/sequence-files/IGVFFI9051PCFO/@@download/IGVFFI9051PCFO.fastq.gz",
"md5sum": "67a28c6b7eee5dd5355317995eff23ca",
"s3_uri": "s3://igvf-files/2023/10/05/91959458-3854-449a-911e-f66d1648f237/IGVFFI9051PCFO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B04_D_nova_N1_L002_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6648ERSI/",
"accession": "IGVFFI6648ERSI",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:20:25.375331+00:00",
"file_format": "fastq",
"file_size": 6888748976,
"href": "/sequence-files/IGVFFI6648ERSI/@@download/IGVFFI6648ERSI.fastq.gz",
"md5sum": "793ace3aab7fde1ead9d2cd803d960ce",
"s3_uri": "s3://igvf-files/2023/10/05/4bd4e081-1631-4cbe-a743-bb0a880adc4f/IGVFFI6648ERSI.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B04_D_nova_N1_L004_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4051MODF/",
"accession": "IGVFFI4051MODF",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:02:16.034360+00:00",
"file_format": "fastq",
"file_size": 13669988828,
"href": "/sequence-files/IGVFFI4051MODF/@@download/IGVFFI4051MODF.fastq.gz",
"md5sum": "ba8f751700841d0e5e35e7192aeef8b4",
"s3_uri": "s3://igvf-files/2023/10/05/e4992dab-e056-47af-969c-29bbcff98d98/IGVFFI4051MODF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B04_D_nova_N1_L003_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7969SDRU/",
"accession": "IGVFFI7969SDRU",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:23:58.791959+00:00",
"file_format": "fastq",
"file_size": 13214377654,
"href": "/sequence-files/IGVFFI7969SDRU/@@download/IGVFFI7969SDRU.fastq.gz",
"md5sum": "82d02585700f5ed73a176e5191148cd0",
"s3_uri": "s3://igvf-files/2023/10/05/df604247-b8b6-4624-be52-708094918e43/IGVFFI7969SDRU.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B04_D_nova_N2_L001_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3359COEH/",
"accession": "IGVFFI3359COEH",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:51:43.166661+00:00",
"file_format": "fastq",
"file_size": 6983044422,
"href": "/sequence-files/IGVFFI3359COEH/@@download/IGVFFI3359COEH.fastq.gz",
"md5sum": "1379b8e9ff539751c253a374debcc7a9",
"s3_uri": "s3://igvf-files/2023/10/05/2fb64946-376e-486a-8c33-68dc4e037fa6/IGVFFI3359COEH.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B04_D_nova_N2_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5428WPNC/",
"accession": "IGVFFI5428WPNC",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:55:12.945011+00:00",
"file_format": "fastq",
"file_size": 13238634120,
"href": "/sequence-files/IGVFFI5428WPNC/@@download/IGVFFI5428WPNC.fastq.gz",
"md5sum": "4cb815d97063042b17db20485580409c",
"s3_uri": "s3://igvf-files/2023/10/05/78875ec6-d80a-436b-8a45-63e945912645/IGVFFI5428WPNC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B04_D_nova_N2_L004_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI0387UWPG/",
"accession": "IGVFFI0387UWPG",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T21:51:14.990056+00:00",
"file_format": "fastq",
"file_size": 13732430092,
"href": "/sequence-files/IGVFFI0387UWPG/@@download/IGVFFI0387UWPG.fastq.gz",
"md5sum": "e4ba135dba9d7e7cd5f8f73bd0bbfd25",
"s3_uri": "s3://igvf-files/2023/10/05/5f184eee-d6d4-4538-9855-888635ef578e/IGVFFI0387UWPG.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B04_D_nova_N1_L002_R1.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3376VHFM/",
"accession": "IGVFFI3376VHFM",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:09:29.599400+00:00",
"file_format": "fastq",
"file_size": 6890247393,
"href": "/sequence-files/IGVFFI3376VHFM/@@download/IGVFFI3376VHFM.fastq.gz",
"md5sum": "fae45bef661ebdaffc8bd988ad973bb7",
"s3_uri": "s3://igvf-files/2023/10/05/bddf6620-1c95-490e-83a6-89e1d405d132/IGVFFI3376VHFM.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova1/igvf_004_B04_D_nova_N1_L003_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI5834WQEZ/",
"accession": "IGVFFI5834WQEZ",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-10-05T22:31:07.547462+00:00",
"file_format": "fastq",
"file_size": 7008234544,
"href": "/sequence-files/IGVFFI5834WQEZ/@@download/IGVFFI5834WQEZ.fastq.gz",
"md5sum": "8dc6232b46d8fbe744956bd83c1c631c",
"s3_uri": "s3://igvf-files/2023/10/05/97ebf642-d1c9-40f2-9ff0-3b61736901fc/IGVFFI5834WQEZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0008637/",
"status": "released",
"term_name": "Illumina NovaSeq 6000"
},
"status": "released",
"submitted_file_name": "igvf_004/nova2/igvf_004_B04_D_nova_N2_L001_R2.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI0782VWTJ/",
"accession": "IGVFFI0782VWTJ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:25:17.974086+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI0782VWTJ/@@download/IGVFFI0782VWTJ.yaml.gz",
"md5sum": "463000283a4e242efd22bdb8057fbd3d",
"s3_uri": "s3://igvf-files/2024/09/16/089abb38-7ee4-4b48-ab54-f507ff82b4d0/IGVFFI0782VWTJ.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI2963SBVO/",
"accession": "IGVFFI2963SBVO",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:25:24.855441+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI2963SBVO/@@download/IGVFFI2963SBVO.yaml.gz",
"md5sum": "b9ed0305dd289983bcba872a01cfbec4",
"s3_uri": "s3://igvf-files/2024/09/16/7595605e-0a19-4efb-bc35-df5a8f134e44/IGVFFI2963SBVO.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4138LZIV/",
"accession": "IGVFFI4138LZIV",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:25:27.322782+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI4138LZIV/@@download/IGVFFI4138LZIV.yaml.gz",
"md5sum": "96466971ec1dbc853c6bd2192856f42e",
"s3_uri": "s3://igvf-files/2024/09/16/bc009a5c-f245-4bd7-bee5-15f2e4c83296/IGVFFI4138LZIV.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI6414GTWO/",
"accession": "IGVFFI6414GTWO",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:25:22.279715+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI6414GTWO/@@download/IGVFFI6414GTWO.yaml.gz",
"md5sum": "c349f3eea861cf3853fa7acb149ca7ed",
"s3_uri": "s3://igvf-files/2024/09/16/1d4cbf76-9875-4fde-9bc4-eb18c44bb319/IGVFFI6414GTWO.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4162VFNY/",
"accession": "IGVFFI4162VFNY",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:25:21.059295+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI4162VFNY/@@download/IGVFFI4162VFNY.yaml.gz",
"md5sum": "2231c74b6b479ab47203a6c80fae46fd",
"s3_uri": "s3://igvf-files/2024/09/16/f3c8bd5a-5952-470d-843f-0c8c6cb8d3cc/IGVFFI4162VFNY.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI8464LHDY/",
"accession": "IGVFFI8464LHDY",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:25:19.681554+00:00",
"file_format": "yaml",
"file_size": 1350,
"href": "/configuration-files/IGVFFI8464LHDY/@@download/IGVFFI8464LHDY.yaml.gz",
"md5sum": "abd26d2fba8d930cc7d859bc223d9b3b",
"s3_uri": "s3://igvf-files/2024/09/16/bc02b0da-dc0b-4d4e-9f92-00799ffb285b/IGVFFI8464LHDY.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI5052BWAV/",
"accession": "IGVFFI5052BWAV",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:25:26.087812+00:00",
"file_format": "yaml",
"file_size": 1351,
"href": "/configuration-files/IGVFFI5052BWAV/@@download/IGVFFI5052BWAV.yaml.gz",
"md5sum": "9e6022a0a4754fba37f49ba937f455ad",
"s3_uri": "s3://igvf-files/2024/09/16/100bd0cb-6cc8-42ec-9c37-d5f74437bd0f/IGVFFI5052BWAV.yaml.gz",
"status": "released",
"upload_status": "validated"
},
{
"@id": "/configuration-files/IGVFFI4167MBCQ/",
"accession": "IGVFFI4167MBCQ",
"content_type": "seqspec",
"creation_timestamp": "2024-09-16T17:25:23.559925+00:00",
"file_format": "yaml",
"file_size": 1352,
"href": "/configuration-files/IGVFFI4167MBCQ/@@download/IGVFFI4167MBCQ.yaml.gz",
"md5sum": "bcaf9e4164c53faeb99b3fa83ad5bf82",
"s3_uri": "s3://igvf-files/2024/09/16/467d8626-0e51-443a-baee-6389f2098e86/IGVFFI4167MBCQ.yaml.gz",
"status": "released",
"upload_status": "validated"
}
],
"input_for": [
"/analysis-sets/IGVFDS9361RWGU/"
],
"lab": {
"@id": "/labs/ali-mortazavi/",
"title": "Ali Mortazavi, UCI"
},
"notes": "Preferred_assay_titles enum Parse Split-seq has been renamed to be Parse SPLiT-seq.",
"onlist_files": [
"/tabular-files/IGVFFI2591OFQO/",
"/tabular-files/IGVFFI1138MCVX/"
],
"onlist_method": "multi",
"preferred_assay_title": "Parse SPLiT-seq",
"protocols": [
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-dm6gp3zedvzp/v2",
"https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-flash-froz-kxygx396zg8j/v2",
"https://www.protocols.io/view/evercode-wt-mega-v2-2-1-8epv5xxrng1b/v1",
"https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1"
],
"release_timestamp": "2025-04-18T22:52:14.448607+00:00",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM2909LQXK/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM2909LQXK",
"aliases": [
"ali-mortazavi:subpool_004_67C"
],
"cellular_sub_pool": "004_67C",
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"institutional_certificates": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0000948/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "heart",
"term_name": "heart"
},
{
"@id": "/sample-terms/UBERON_0002107/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "liver",
"term_name": "liver"
}
],
"status": "released",
"summary": "multiplexed sample: Mus musculus CAST/EiJ (male, 69 days) liver tissue; Mus musculus 129S1J (female, 72 days) heart tissue; ... and 126 more samples",
"taxa": "Mus musculus",
"treatments": []
}
],
"schema_version": "26",
"sequencing_library_types": [
"mRNA enriched"
],
"status": "released",
"strand_specificity": "5 prime to 3 prime",
"submitted_by": {
"@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
"title": "Diane Trout"
},
"submitted_files_timestamp": "2023-10-05T21:39:24.494649+00:00",
"summary": "Parse SPLiT-seq",
"uuid": "0b317064-1305-4a09-a536-aa8d6959ffc6"
}