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MeasurementSet
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IGVFDS1748RGNP
IGVFDS1748RGNP
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This object is in preview status. Metadata is subject to change until this object is released.
File Set Type
experimental data
Summary
single-nucleus ATAC-seq (10x multiome)
Assay Term
single-nucleus ATAC-seq
Sample Summaries
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
Protocols
https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn
Aliases
igvf:corces_measurementSet_RP031_G1_ATAC
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Results (Illumina)
12 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1734HWFE
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19U7CA4LE
8
2.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3459ZSOZ
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19U7CA4LE
7
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3952MZME
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19U7CA4LE
6
2.1 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI3958IJOW
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19U7CA4LE
7
8.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4299NVHV
fastq
reads
R1
1
Read 1
Illumina NovaSeq X
19U7CA4LE
6
8.7 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI4541UUTS
fastq
reads
I1
1
Illumina NovaSeq X
19U7CA4LE
6
942 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI6582BNCN
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19U7CA4LE
6
8.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7017NETQ
fastq
reads
R2
1
Barcode index
Illumina NovaSeq X
19U7CA4LE
8
659 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI7277VIZC
fastq
reads
I1
1
Illumina NovaSeq X
19U7CA4LE
8
339 MB
Ryan Corces, Gladstone Institute UCSF
validated
IGVFFI8785DSRF
fastq
reads
R3
1
Read 2
Illumina NovaSeq X
19U7CA4LE
8
2.5 GB
Ryan Corces, Gladstone Institute UCSF
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
IGVFSM6328YMOY
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
multiple sclerosis
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples
Donors
8 items
Accession
Aliases
Sex
Taxa
IGVFDO5194SXHC
igvf:corces_donor_BANN1747
male
Homo sapiens
IGVFDO5410JIJT
igvf:corces_donor_BANN0919
male
Homo sapiens
IGVFDO6013FYCW
igvf:corces_donor_BANN0912
male
Homo sapiens
IGVFDO7109IWDJ
igvf:corces_donor_BANN2005
male
Homo sapiens
IGVFDO7186XJLL
igvf:corces_donor_BANN1639
male
Homo sapiens
IGVFDO8155MCUV
igvf:corces_donor_BANN0437
female
Homo sapiens
IGVFDO8458OKEW
igvf:corces_donor_BANN1623
male
Homo sapiens
IGVFDO9211DWXZ
igvf:corces_donor_BANN1352
female
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2154EKES
MeasurementSet
single-nucleus RNA sequencing assay (10x multiome)
igvf:corces_measurementSet_RP031_G1_RNA
Ryan Corces, Gladstone Institute UCSF