{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS1748RGNP/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1748RGNP",
"aliases": [
"igvf:corces_measurementSet_RP031_G1_ATAC"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002762/",
"assay_slims": [
"chromatin accessibility"
],
"status": "released",
"term_name": "single-nucleus ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [b1bcbcb3-200c-4716-b4cc-8cc2cc3ee208](/phenotypic-features/b1bcbcb3-200c-4716-b4cc-8cc2cc3ee208/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [4fa3d51f-faa7-48b9-b76b-58bbb23ba4cb](/phenotypic-features/4fa3d51f-faa7-48b9-b76b-58bbb23ba4cb/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [3f62e325-e003-4f54-a5ed-1e5ab90bffbb](/phenotypic-features/3f62e325-e003-4f54-a5ed-1e5ab90bffbb/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [4a89566b-e6ee-4846-b48a-601a52c201ab](/phenotypic-features/4a89566b-e6ee-4846-b48a-601a52c201ab/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [9109c230-248d-47c3-9cff-73daf2db597a](/phenotypic-features/9109c230-248d-47c3-9cff-73daf2db597a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8458OKEW](/human-donors/IGVFDO8458OKEW/) has in progress subobject phenotypic feature [fc1de29e-57a0-4cdb-ac92-597485b27795](/phenotypic-features/fc1de29e-57a0-4cdb-ac92-597485b27795/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8458OKEW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [25df185e-787e-41d8-b161-a524d1183f55](/phenotypic-features/25df185e-787e-41d8-b161-a524d1183f55/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [0b83aa3d-f968-4f99-9ed1-6035e64cf81d](/phenotypic-features/0b83aa3d-f968-4f99-9ed1-6035e64cf81d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [b205a9bf-71f0-45f4-8fe9-d3ecd7e56b67](/phenotypic-features/b205a9bf-71f0-45f4-8fe9-d3ecd7e56b67/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [1b5dfd5f-7289-4dcc-afbe-0c6e4446f22c](/phenotypic-features/1b5dfd5f-7289-4dcc-afbe-0c6e4446f22c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [61f3a82b-e754-457c-949c-01aeff12f1e1](/phenotypic-features/61f3a82b-e754-457c-949c-01aeff12f1e1/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO6013FYCW](/human-donors/IGVFDO6013FYCW/) has in progress subobject phenotypic feature [b1bac7dd-412a-460a-9336-044c2b41f36b](/phenotypic-features/b1bac7dd-412a-460a-9336-044c2b41f36b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO6013FYCW/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [d78f4b48-7bfb-40b4-a5a7-4e2207d7a43b](/phenotypic-features/d78f4b48-7bfb-40b4-a5a7-4e2207d7a43b/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [2d965f3b-4869-4a71-96f5-9b35c25cd94a](/phenotypic-features/2d965f3b-4869-4a71-96f5-9b35c25cd94a/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [fc0c92f4-96a4-4665-bf46-bf345a1cb081](/phenotypic-features/fc0c92f4-96a4-4665-bf46-bf345a1cb081/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [6ea3add1-256e-497d-b2ed-6440e1b9c61d](/phenotypic-features/6ea3add1-256e-497d-b2ed-6440e1b9c61d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [e6ce9dcf-358f-4bfa-88fe-80aa93093ef6](/phenotypic-features/e6ce9dcf-358f-4bfa-88fe-80aa93093ef6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7186XJLL](/human-donors/IGVFDO7186XJLL/) has in progress subobject phenotypic feature [f869ce97-cce9-4af8-8c36-07e368584a17](/phenotypic-features/f869ce97-cce9-4af8-8c36-07e368584a17/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7186XJLL/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [359e56f1-634f-4096-b79c-f872a8108e1c](/phenotypic-features/359e56f1-634f-4096-b79c-f872a8108e1c/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [ee18415f-0f87-45dc-b22c-da8f3ea2b325](/phenotypic-features/ee18415f-0f87-45dc-b22c-da8f3ea2b325/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [a6b0187e-c51c-447e-866d-b3e071ab31a3](/phenotypic-features/a6b0187e-c51c-447e-866d-b3e071ab31a3/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [b47cc28c-d555-41de-a0dc-7781d0884be0](/phenotypic-features/b47cc28c-d555-41de-a0dc-7781d0884be0/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [089d8c0e-3573-4f1a-a25e-68c9e9178176](/phenotypic-features/089d8c0e-3573-4f1a-a25e-68c9e9178176/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5194SXHC](/human-donors/IGVFDO5194SXHC/) has in progress subobject phenotypic feature [56bca94c-e5cb-4bd1-b90a-9977dedaa882](/phenotypic-features/56bca94c-e5cb-4bd1-b90a-9977dedaa882/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5194SXHC/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [c2f14d65-c7f8-46d1-8093-818906473518](/phenotypic-features/c2f14d65-c7f8-46d1-8093-818906473518/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [a0a18d18-51af-4fbc-9a8c-baa6f6b720cd](/phenotypic-features/a0a18d18-51af-4fbc-9a8c-baa6f6b720cd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [48e0e9c9-7759-4913-8219-2471979d793e](/phenotypic-features/48e0e9c9-7759-4913-8219-2471979d793e/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [a393f393-5482-4671-b57c-fe8bfe6e8927](/phenotypic-features/a393f393-5482-4671-b57c-fe8bfe6e8927/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [5206796d-df44-42d5-a495-92cfc4ef55c6](/phenotypic-features/5206796d-df44-42d5-a495-92cfc4ef55c6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO9211DWXZ](/human-donors/IGVFDO9211DWXZ/) has in progress subobject phenotypic feature [2c783c74-fa89-4766-b218-3e0da350c6da](/phenotypic-features/2c783c74-fa89-4766-b218-3e0da350c6da/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO9211DWXZ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [ab0c4c39-15a5-415a-891b-05411b5bdfc6](/phenotypic-features/ab0c4c39-15a5-415a-891b-05411b5bdfc6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [46b3e3ac-e90e-4f3c-8941-5af5fceb9b99](/phenotypic-features/46b3e3ac-e90e-4f3c-8941-5af5fceb9b99/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [5df41812-ca61-438a-8942-0827a98215bf](/phenotypic-features/5df41812-ca61-438a-8942-0827a98215bf/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [eb56d44e-c3b9-4e22-aff7-d12c6ac5fa85](/phenotypic-features/eb56d44e-c3b9-4e22-aff7-d12c6ac5fa85/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [1ef24011-d1f8-48ff-9e1f-555e57610cd6](/phenotypic-features/1ef24011-d1f8-48ff-9e1f-555e57610cd6/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO8155MCUV](/human-donors/IGVFDO8155MCUV/) has in progress subobject phenotypic feature [d0628ba8-dcc8-4c05-bf8e-08dbbb919b2f](/phenotypic-features/d0628ba8-dcc8-4c05-bf8e-08dbbb919b2f/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO8155MCUV/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [3101c455-2038-49a5-9ba3-d6d44b02e1af](/phenotypic-features/3101c455-2038-49a5-9ba3-d6d44b02e1af/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [f302fb2e-c140-4148-a63f-4995c94219cd](/phenotypic-features/f302fb2e-c140-4148-a63f-4995c94219cd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [8571b362-6133-4f95-8a7d-3f8eadd9f3e7](/phenotypic-features/8571b362-6133-4f95-8a7d-3f8eadd9f3e7/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [1baae586-6df7-4bd4-b45d-715e7c843036](/phenotypic-features/1baae586-6df7-4bd4-b45d-715e7c843036/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [a641a480-5815-4668-9082-c3eea81343dd](/phenotypic-features/a641a480-5815-4668-9082-c3eea81343dd/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO5410JIJT](/human-donors/IGVFDO5410JIJT/) has in progress subobject phenotypic feature [0bb4a2a6-714d-4f1b-b1ca-f553eaddf065](/phenotypic-features/0bb4a2a6-714d-4f1b-b1ca-f553eaddf065/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO5410JIJT/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [2d016559-41a5-4d0d-a206-e9b31fadb322](/phenotypic-features/2d016559-41a5-4d0d-a206-e9b31fadb322/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [73d02d35-b7a0-4250-9e20-8fe585c949ff](/phenotypic-features/73d02d35-b7a0-4250-9e20-8fe585c949ff/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [379eea64-a47e-4b72-9c55-562a0998a7be](/phenotypic-features/379eea64-a47e-4b72-9c55-562a0998a7be/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [58ee8a7b-2d6c-4319-a3ed-659f8f4bd2ad](/phenotypic-features/58ee8a7b-2d6c-4319-a3ed-659f8f4bd2ad/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [5c7de610-9d77-4450-b755-6296339a9a06](/phenotypic-features/5c7de610-9d77-4450-b755-6296339a9a06/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
},
{
"category": "mismatched status",
"detail": "Preview human donor [IGVFDO7109IWDJ](/human-donors/IGVFDO7109IWDJ/) has in progress subobject phenotypic feature [c7893559-54d2-4768-bfcc-e705d88c884d](/phenotypic-features/c7893559-54d2-4768-bfcc-e705d88c884d/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/human-donors/IGVFDO7109IWDJ/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS1748RGNP](/measurement-sets/IGVFDS1748RGNP/) has sequence file(s): [IGVFFI7017NETQ](/sequence-files/IGVFFI7017NETQ/), [IGVFFI3952MZME](/sequence-files/IGVFFI3952MZME/), [IGVFFI6582BNCN](/sequence-files/IGVFFI6582BNCN/), [IGVFFI4541UUTS](/sequence-files/IGVFFI4541UUTS/), [IGVFFI8926UTDV](/sequence-files/IGVFFI8926UTDV/), [IGVFFI3459ZSOZ](/sequence-files/IGVFFI3459ZSOZ/), [IGVFFI9476DMTO](/sequence-files/IGVFFI9476DMTO/), [IGVFFI7277VIZC](/sequence-files/IGVFFI7277VIZC/), [IGVFFI4299NVHV](/sequence-files/IGVFFI4299NVHV/), [IGVFFI3958IJOW](/sequence-files/IGVFFI3958IJOW/), [IGVFFI1734HWFE](/sequence-files/IGVFFI1734HWFE/), [IGVFFI8785DSRF](/sequence-files/IGVFFI8785DSRF/) which do not have any `seqspecs`. Sequence files in a file set associated with single cell data are expected to link to a sequence specification file.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS1748RGNP/"
},
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS1748RGNP](/measurement-sets/IGVFDS1748RGNP/) is missing required `strand_specificity`. Single-cell assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS1748RGNP/"
}
],
"WARNING": [
{
"category": "missing analysis",
"detail": "Measurement set [IGVFDS1748RGNP](/measurement-sets/IGVFDS1748RGNP/) is a raw data set with files, but is not listed in any `input_file_sets` for any analysis sets. Raw data sets with files are expected to be associated with at least one analysis set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_input_for",
"path": "/measurement-sets/IGVFDS1748RGNP/"
}
]
},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping",
"contact_pi": {
"@id": "/users/eae4c275-1e07-45e4-ae67-3e437a8680bb/",
"title": "Ansuman Satpathy"
},
"title": "Single-cell Mapping Center for Human Regulatory Elements and Gene Activity"
},
"control_for": [],
"controlled_access": false,
"creation_timestamp": "2025-03-19T19:58:41.852270+00:00",
"data_use_limitation_summaries": [
"No limitations"
],
"donors": [
{
"@id": "/human-donors/IGVFDO8458OKEW/",
"accession": "IGVFDO8458OKEW",
"aliases": [
"igvf:corces_donor_BANN1623"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6013FYCW/",
"accession": "IGVFDO6013FYCW",
"aliases": [
"igvf:corces_donor_BANN0912"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9211DWXZ/",
"accession": "IGVFDO9211DWXZ",
"aliases": [
"igvf:corces_donor_BANN1352"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5410JIJT/",
"accession": "IGVFDO5410JIJT",
"aliases": [
"igvf:corces_donor_BANN0919"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7109IWDJ/",
"accession": "IGVFDO7109IWDJ",
"aliases": [
"igvf:corces_donor_BANN2005"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7186XJLL/",
"accession": "IGVFDO7186XJLL",
"aliases": [
"igvf:corces_donor_BANN1639"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8155MCUV/",
"accession": "IGVFDO8155MCUV",
"aliases": [
"igvf:corces_donor_BANN0437"
],
"sex": "female",
"status": "preview",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5194SXHC/",
"accession": "IGVFDO5194SXHC",
"aliases": [
"igvf:corces_donor_BANN1747"
],
"sex": "male",
"status": "preview",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
"files": [
{
"@id": "/sequence-files/IGVFFI7017NETQ/",
"accession": "IGVFFI7017NETQ",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L008_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:18:06.352227+00:00",
"file_format": "fastq",
"file_size": 658836598,
"href": "/sequence-files/IGVFFI7017NETQ/@@download/IGVFFI7017NETQ.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/f894e753-0fa4-4bbb-916d-f32b47af1a30/IGVFFI7017NETQ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L008_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3952MZME/",
"accession": "IGVFFI3952MZME",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L006_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:17:37.667007+00:00",
"file_format": "fastq",
"file_size": 2119436976,
"href": "/sequence-files/IGVFFI3952MZME/@@download/IGVFFI3952MZME.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/ee4466cf-23ae-40c8-9adf-f8ae3d347830/IGVFFI3952MZME.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L006_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI6582BNCN/",
"accession": "IGVFFI6582BNCN",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L006_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:17:41.554495+00:00",
"file_format": "fastq",
"file_size": 8415486146,
"href": "/sequence-files/IGVFFI6582BNCN/@@download/IGVFFI6582BNCN.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/b56b47bc-ee2a-4df8-86fd-0b6e6856aa8c/IGVFFI6582BNCN.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L006_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4541UUTS/",
"accession": "IGVFFI4541UUTS",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L006_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:17:30.961882+00:00",
"file_format": "fastq",
"file_size": 941653331,
"href": "/sequence-files/IGVFFI4541UUTS/@@download/IGVFFI4541UUTS.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/6ee5d459-a787-44cc-8988-b3ecbf5c577c/IGVFFI4541UUTS.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L006_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8926UTDV/",
"accession": "IGVFFI8926UTDV",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L007_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:17:45.308859+00:00",
"file_format": "fastq",
"file_size": 945027778,
"href": "/sequence-files/IGVFFI8926UTDV/@@download/IGVFFI8926UTDV.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/40074cc1-e2a4-42da-a3a4-bab89fea99b0/IGVFFI8926UTDV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L007_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3459ZSOZ/",
"accession": "IGVFFI3459ZSOZ",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L007_R2"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:17:52.047526+00:00",
"file_format": "fastq",
"file_size": 2128768219,
"href": "/sequence-files/IGVFFI3459ZSOZ/@@download/IGVFFI3459ZSOZ.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/a6fa07d2-999d-4da6-a488-42b43c7bba58/IGVFFI3459ZSOZ.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L007_R2_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI9476DMTO/",
"accession": "IGVFFI9476DMTO",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L007_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:17:55.750348+00:00",
"file_format": "fastq",
"file_size": 8446038042,
"href": "/sequence-files/IGVFFI9476DMTO/@@download/IGVFFI9476DMTO.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/e4b84b6a-ec0f-462d-ade5-da9e65561722/IGVFFI9476DMTO.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L007_R3_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI7277VIZC/",
"accession": "IGVFFI7277VIZC",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L008_I1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:17:59.256663+00:00",
"file_format": "fastq",
"file_size": 339197369,
"href": "/sequence-files/IGVFFI7277VIZC/@@download/IGVFFI7277VIZC.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/e8e612e0-ceb5-4c94-b79a-2bbfab8fe9a2/IGVFFI7277VIZC.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L008_I1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI4299NVHV/",
"accession": "IGVFFI4299NVHV",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L006_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:17:34.062256+00:00",
"file_format": "fastq",
"file_size": 8718272540,
"href": "/sequence-files/IGVFFI4299NVHV/@@download/IGVFFI4299NVHV.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/1428236c-18ac-48be-b310-6c16b7546447/IGVFFI4299NVHV.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L006_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI3958IJOW/",
"accession": "IGVFFI3958IJOW",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L007_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:17:48.598091+00:00",
"file_format": "fastq",
"file_size": 8714123008,
"href": "/sequence-files/IGVFFI3958IJOW/@@download/IGVFFI3958IJOW.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/c8a81bbc-bf1f-41ef-81f7-f13137fa6b78/IGVFFI3958IJOW.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L007_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI1734HWFE/",
"accession": "IGVFFI1734HWFE",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L008_R1"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:18:02.779347+00:00",
"file_format": "fastq",
"file_size": 2463813720,
"href": "/sequence-files/IGVFFI1734HWFE/@@download/IGVFFI1734HWFE.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/25f0b0c9-2f07-40f2-b38b-1eb622a5650f/IGVFFI1734HWFE.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L008_R1_001.fastq.gz",
"upload_status": "validated"
},
{
"@id": "/sequence-files/IGVFFI8785DSRF/",
"accession": "IGVFFI8785DSRF",
"aliases": [
"igvf:corces_sequenceFile_ATAC_RP031_G1_P079_L008_R3"
],
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2025-03-21T03:18:10.077513+00:00",
"file_format": "fastq",
"file_size": 2480232565,
"href": "/sequence-files/IGVFFI8785DSRF/@@download/IGVFFI8785DSRF.fastq.gz",
"s3_uri": "s3://igvf-files/2025/03/21/5c1471bb-2324-4286-95c1-89366d604c08/IGVFFI8785DSRF.fastq.gz",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"status": "preview",
"submitted_file_name": "Multiome_ATAC_RP031_G1_L001_P079_S9_L008_R3_001.fastq.gz",
"upload_status": "validated"
}
],
"input_for": [],
"lab": {
"@id": "/labs/ryan-corces/",
"title": "Ryan Corces, Gladstone Institute UCSF"
},
"multiome_size": 2,
"onlist_files": [
"/tabular-files/IGVFFI7587TJLC/"
],
"onlist_method": "no combination",
"preferred_assay_title": "10x multiome",
"protocols": [
"https://www.protocols.io/view/chromium-next-gem-single-cell-multiome-atac-gene-e-d5k784zn"
],
"related_multiome_datasets": [
{
"@id": "/measurement-sets/IGVFDS2154EKES/",
"accession": "IGVFDS2154EKES",
"status": "preview"
}
],
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM6328YMOY/",
"@type": [
"MultiplexedSample",
"Sample",
"Item"
],
"accession": "IGVFSM6328YMOY",
"aliases": [
"igvf:corces_multiplexedSample_RP031_G1"
],
"classifications": [
"tissue",
"multiplexed sample"
],
"disease_terms": [
{
"@id": "/phenotype-terms/DOID_0080832/",
"status": "in progress",
"term_name": "mild cognitive impairment"
},
{
"@id": "/phenotype-terms/DOID_14330/",
"status": "in progress",
"term_name": "Parkinson's disease"
},
{
"@id": "/phenotype-terms/DOID_2377/",
"status": "in progress",
"term_name": "multiple sclerosis"
},
{
"@id": "/phenotype-terms/DOID_9246/",
"status": "in progress",
"term_name": "cerebral amyloid angiopathy"
},
{
"@id": "/phenotype-terms/MONDO_0004975/",
"status": "released",
"term_name": "Alzheimer disease"
}
],
"institutional_certificates": [
{
"@id": "/institutional-certificates/f7742e0d-bba4-4ca3-ab80-71c7364f24e7/",
"certificate_identifier": "IP115-05",
"controlled_access": false,
"status": "in progress"
}
],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0001874/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "putamen",
"term_name": "putamen"
},
{
"@id": "/sample-terms/UBERON_0002038/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "substantia nigra",
"term_name": "substantia nigra"
},
{
"@id": "/sample-terms/UBERON_0002740/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "preview",
"summary": "posterior cingulate gyrus",
"term_name": "posterior cingulate gyrus"
}
],
"status": "preview",
"summary": "multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"schema_version": "26",
"status": "preview",
"submitted_by": {
"@id": "/users/c13db3ca-f844-4a69-9056-5fbc4a100f36/",
"title": "Ryan Corces"
},
"submitted_files_timestamp": "2025-03-21T03:17:30.961882+00:00",
"summary": "single-nucleus ATAC-seq (10x multiome)",
"uuid": "4ed5be98-550d-4951-8a55-ffd705f55395"
}