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INDEXED
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MeasurementSet
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IGVFDS1198IPLX
IGVFDS1198IPLX
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell RNA sequencing assay (SHARE-seq)
Assay Term
single-cell RNA sequencing assay
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 206)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scRNA Lib 381
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
6 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0188GBTG
fastq
reads
R1
3929
Read 1
IGVFFI5271QFMH
Illumina NovaSeq X
22523KLT3
810 MB
Jason Buenrostro, Broad
validated
IGVFFI5012JDCA
fastq
reads
R2
3965
Read 2
IGVFFI2132UUNP
Illumina NovaSeq X
22523KLT3
429 MB
Jason Buenrostro, Broad
validated
IGVFFI6991NTYV
fastq
reads
R1
3965
Read 1
IGVFFI2132UUNP
Illumina NovaSeq X
22523KLT3
877 MB
Jason Buenrostro, Broad
validated
IGVFFI7697YBZP
fastq
reads
I1
3929
Barcode index
IGVFFI5271QFMH
Illumina NovaSeq X
22523KLT3
308 MB
Jason Buenrostro, Broad
validated
IGVFFI8671ASVV
fastq
reads
I1
3965
Barcode index
IGVFFI2132UUNP
Illumina NovaSeq X
22523KLT3
332 MB
Jason Buenrostro, Broad
validated
IGVFFI9549AAYO
fastq
reads
R2
3929
Read 2
IGVFFI5271QFMH
Illumina NovaSeq X
22523KLT3
392 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM1924UNAL
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 206)
Donors
99 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0123YZDN
buenrostro-bernstein:Donor 1943
unspecified
Homo sapiens
IGVFDO0211CZWE
buenrostro-bernstein:Donor 1909
unspecified
Homo sapiens
IGVFDO0279GJBF
buenrostro-bernstein:Donor 1937
unspecified
Homo sapiens
IGVFDO0417TJMX
buenrostro-bernstein:Donor 1907
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508COBR
buenrostro-bernstein:Donor 1963
unspecified
Homo sapiens
IGVFDO0948FTCE
buenrostro-bernstein:Donor 1952
unspecified
Homo sapiens
IGVFDO0980QZSD
buenrostro-bernstein:Donor 1946
unspecified
Homo sapiens
IGVFDO1064GZAS
buenrostro-bernstein:Donor 1982
unspecified
Homo sapiens
IGVFDO1255IJEH
buenrostro-bernstein:Donor 1975
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS9209YQYT
MeasurementSet
single-cell ATAC-seq (SHARE-seq)
buenrostro-bernstein:scATAC Lib 590
Jason Buenrostro, Broad