{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS1198IPLX/",
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"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS1198IPLX",
"aliases": [
"buenrostro-bernstein:scRNA Lib 381"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002631/",
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"gene expression"
],
"status": "released",
"term_name": "single-cell RNA sequencing assay"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "missing publication",
"detail": "In vitro system [IGVFSM1924UNAL](/in-vitro-systems/IGVFSM1924UNAL/) has no `publications`. Released and archived samples are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_sample_missing_publication",
"path": "/in-vitro-systems/IGVFSM1924UNAL/"
},
{
"category": "missing publication",
"detail": "Measurement set [IGVFDS1198IPLX](/measurement-sets/IGVFDS1198IPLX/) has no `publications`. Released and archived file sets are expected to be associated with a publication.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_file_set_missing_publication",
"path": "/measurement-sets/IGVFDS1198IPLX/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS1198IPLX](/measurement-sets/IGVFDS1198IPLX/) has in progress subobject tabular file [IGVFFI0400MBIM](/tabular-files/IGVFFI0400MBIM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS1198IPLX/"
},
{
"category": "mismatched status",
"detail": "Released measurement set [IGVFDS1198IPLX](/measurement-sets/IGVFDS1198IPLX/) has in progress subobject tabular file [IGVFFI8433TDKP](/tabular-files/IGVFFI8433TDKP/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/measurement-sets/IGVFDS1198IPLX/"
}
],
"NOT_COMPLIANT": [
{
"category": "missing strand specificity",
"detail": "Measurement set [IGVFDS1198IPLX](/measurement-sets/IGVFDS1198IPLX/) is missing required `strand_specificity`. Gene expression based assays are expected to specify strand specificity.",
"level": 50,
"level_name": "NOT_COMPLIANT",
"name": "audit_missing_strand_specificity",
"path": "/measurement-sets/IGVFDS1198IPLX/"
}
]
},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping",
"contact_pi": {
"@id": "/users/33c6eb70-e143-4f77-9661-4b3905737daa/",
"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
"control_for": [],
"controlled_access": true,
"creation_timestamp": "2024-08-20T14:59:30.045928+00:00",
"data_use_limitation_summaries": [
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],
"donors": [
{
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],
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},
{
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],
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},
{
"@id": "/human-donors/IGVFDO2605TXDO/",
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],
"sex": "unspecified",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1255IJEH/",
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"buenrostro-bernstein:Donor 1975"
],
"sex": "unspecified",
"status": "released",
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},
{
"@id": "/human-donors/IGVFDO5046RYOV/",
"accession": "IGVFDO5046RYOV",
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"status": "released",
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},
{
"@id": "/human-donors/IGVFDO8033HKMP/",
"accession": "IGVFDO8033HKMP",
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],
"sex": "unspecified",
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},
{
"@id": "/human-donors/IGVFDO4983SZXB/",
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2476MGFK/",
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2540COFN/",
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0508COBR/",
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"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3469EFJR/",
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"aliases": [
"buenrostro-bernstein:Donor 1741"
],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6064BKKJ/",
"accession": "IGVFDO6064BKKJ",
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"sex": "unspecified",
"status": "released",
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},
{
"@id": "/human-donors/IGVFDO9907ZZVD/",
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},
{
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8979DYIF/",
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO0211CZWE/",
"accession": "IGVFDO0211CZWE",
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3701XUXY/",
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO9063CMXP/",
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4747GRSS/",
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5934RGQS/",
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO1512EGWF/",
"accession": "IGVFDO1512EGWF",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8776OLQD/",
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5669IKNL/",
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"status": "released",
"taxa": "Homo sapiens"
},
{
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{
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"taxa": "Homo sapiens"
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{
"@id": "/human-donors/IGVFDO4283QEWA/",
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"sex": "unspecified",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6075RUJJ/",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4092SMML/",
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"sex": "unspecified",
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},
{
"@id": "/human-donors/IGVFDO5249VKYA/",
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{
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4924NHKE/",
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO7384GLJG/",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6156FWSA/",
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4048DUKN/",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8042WODZ/",
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},
{
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},
{
"@id": "/human-donors/IGVFDO9261YIGN/",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3881ZKMA/",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3115AJIV/",
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{
"@id": "/human-donors/IGVFDO8459PAOB/",
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{
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},
{
"@id": "/human-donors/IGVFDO1467HGMO/",
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{
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},
{
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},
{
"@id": "/human-donors/IGVFDO4207CTJX/",
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},
{
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{
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},
{
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},
{
"@id": "/human-donors/IGVFDO1064GZAS/",
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"sex": "unspecified",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2674JORG/",
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},
{
"@id": "/human-donors/IGVFDO8271RBMD/",
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},
{
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},
{
"@id": "/human-donors/IGVFDO7506JTFC/",
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},
{
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8004EZUP/",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO6183QMMP/",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2583SIHN/",
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},
{
"@id": "/human-donors/IGVFDO5566VPJU/",
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},
{
"@id": "/human-donors/IGVFDO9815AMKV/",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4974JBDF/",
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5150ROJL/",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8886WODZ/",
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},
{
"@id": "/human-donors/IGVFDO3154SUBV/",
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8663MIYC/",
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO4449DKJZ/",
"accession": "IGVFDO4449DKJZ",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3082FYQJ/",
"accession": "IGVFDO3082FYQJ",
"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO2217VSIY/",
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],
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"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO8195QBTP/",
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"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO5473XXFQ/",
"accession": "IGVFDO5473XXFQ",
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],
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"taxa": "Homo sapiens"
},
{
"@id": "/human-donors/IGVFDO3010FULG/",
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"aliases": [
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],
"sex": "unspecified",
"status": "released",
"taxa": "Homo sapiens"
},
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{
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"summary": "single-cell RNA sequencing assay (SHARE-seq)",
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}