{
"@context": "/terms/",
"@id": "/measurement-sets/IGVFDS0974QLVO/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0974QLVO",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep4-BinC_AmpliconSequencing"
],
"assay_term": {
"@id": "/assay-terms/OBI_0003661/",
"status": "released",
"term_name": "in vitro CRISPR screen using flow cytometry"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released in vitro system [IGVFSM8798UNXX](/in-vitro-systems/IGVFSM8798UNXX/) has in progress subobject construct library set [IGVFDS2385DHZO](/construct-library-sets/IGVFDS2385DHZO/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/in-vitro-systems/IGVFSM8798UNXX/"
},
{
"category": "missing sequencing kit",
"detail": "Measurement set [IGVFDS0974QLVO](/measurement-sets/IGVFDS0974QLVO/) has sequence file(s) [IGVFFI4142CADT](/sequence-files/IGVFFI4142CADT/), [IGVFFI9686ZXPR](/sequence-files/IGVFFI9686ZXPR/), [IGVFFI4269JBKC](/sequence-files/IGVFFI4269JBKC/), [IGVFFI2106VZVV](/sequence-files/IGVFFI2106VZVV/), [IGVFFI3003OHQW](/sequence-files/IGVFFI3003OHQW/), [IGVFFI6528MGLF](/sequence-files/IGVFFI6528MGLF/), [IGVFFI7215BWQB](/sequence-files/IGVFFI7215BWQB/), [IGVFFI9671REGY](/sequence-files/IGVFFI9671REGY/), [IGVFFI2952CHMR](/sequence-files/IGVFFI2952CHMR/), [IGVFFI4233RMDA](/sequence-files/IGVFFI4233RMDA/), [IGVFFI9194FNVP](/sequence-files/IGVFFI9194FNVP/), [IGVFFI8453XOAD](/sequence-files/IGVFFI8453XOAD/), [IGVFFI4114PFHK](/sequence-files/IGVFFI4114PFHK/), [IGVFFI1710GPDZ](/sequence-files/IGVFFI1710GPDZ/), [IGVFFI0124CFMN](/sequence-files/IGVFFI0124CFMN/), [IGVFFI4953AYXY](/sequence-files/IGVFFI4953AYXY/), [IGVFFI2930PAYZ](/sequence-files/IGVFFI2930PAYZ/), [IGVFFI5493LLRO](/sequence-files/IGVFFI5493LLRO/), [IGVFFI0107ZPQB](/sequence-files/IGVFFI0107ZPQB/), [IGVFFI9749IBXF](/sequence-files/IGVFFI9749IBXF/), [IGVFFI3585MBYB](/sequence-files/IGVFFI3585MBYB/), [IGVFFI3037YHVZ](/sequence-files/IGVFFI3037YHVZ/), [IGVFFI4435GQBC](/sequence-files/IGVFFI4435GQBC/), [IGVFFI9959VOXF](/sequence-files/IGVFFI9959VOXF/), [IGVFFI8425IBKP](/sequence-files/IGVFFI8425IBKP/), [IGVFFI4569XAWR](/sequence-files/IGVFFI4569XAWR/), [IGVFFI9649BAQU](/sequence-files/IGVFFI9649BAQU/), [IGVFFI5736XJTC](/sequence-files/IGVFFI5736XJTC/), [IGVFFI5478DROE](/sequence-files/IGVFFI5478DROE/), [IGVFFI3023GTGL](/sequence-files/IGVFFI3023GTGL/), [IGVFFI7522RYZS](/sequence-files/IGVFFI7522RYZS/), [IGVFFI9549IOAW](/sequence-files/IGVFFI9549IOAW/), [IGVFFI6157IKDE](/sequence-files/IGVFFI6157IKDE/), [IGVFFI2733TORX](/sequence-files/IGVFFI2733TORX/), [IGVFFI2256WABA](/sequence-files/IGVFFI2256WABA/), [IGVFFI1243NKNI](/sequence-files/IGVFFI1243NKNI/), [IGVFFI7952PGYG](/sequence-files/IGVFFI7952PGYG/), [IGVFFI6058QTDD](/sequence-files/IGVFFI6058QTDD/), [IGVFFI6851KBBB](/sequence-files/IGVFFI6851KBBB/), [IGVFFI7465UGUQ](/sequence-files/IGVFFI7465UGUQ/), [IGVFFI3057ZJKD](/sequence-files/IGVFFI3057ZJKD/), [IGVFFI9107KDEP](/sequence-files/IGVFFI9107KDEP/), [IGVFFI1810SCSG](/sequence-files/IGVFFI1810SCSG/), [IGVFFI4646QREH](/sequence-files/IGVFFI4646QREH/), [IGVFFI6142AQUH](/sequence-files/IGVFFI6142AQUH/), [IGVFFI7839PZWY](/sequence-files/IGVFFI7839PZWY/), [IGVFFI9630INDK](/sequence-files/IGVFFI9630INDK/), [IGVFFI9824LCJE](/sequence-files/IGVFFI9824LCJE/) which lack specification of a `sequencing_kit`. Sequence files should specify a sequencing kit.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_inconsistent_sequencing_kit",
"path": "/measurement-sets/IGVFDS0974QLVO/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0974QLVO](/measurement-sets/IGVFDS0974QLVO/) has sequence file(s): [IGVFFI4142CADT](/sequence-files/IGVFFI4142CADT/), [IGVFFI9686ZXPR](/sequence-files/IGVFFI9686ZXPR/), [IGVFFI4269JBKC](/sequence-files/IGVFFI4269JBKC/), [IGVFFI2106VZVV](/sequence-files/IGVFFI2106VZVV/), [IGVFFI3003OHQW](/sequence-files/IGVFFI3003OHQW/), [IGVFFI6528MGLF](/sequence-files/IGVFFI6528MGLF/), [IGVFFI7215BWQB](/sequence-files/IGVFFI7215BWQB/), [IGVFFI9671REGY](/sequence-files/IGVFFI9671REGY/), [IGVFFI2952CHMR](/sequence-files/IGVFFI2952CHMR/), [IGVFFI4233RMDA](/sequence-files/IGVFFI4233RMDA/), [IGVFFI9194FNVP](/sequence-files/IGVFFI9194FNVP/), [IGVFFI8453XOAD](/sequence-files/IGVFFI8453XOAD/), [IGVFFI4114PFHK](/sequence-files/IGVFFI4114PFHK/), [IGVFFI1710GPDZ](/sequence-files/IGVFFI1710GPDZ/), [IGVFFI0124CFMN](/sequence-files/IGVFFI0124CFMN/), [IGVFFI4953AYXY](/sequence-files/IGVFFI4953AYXY/), [IGVFFI2930PAYZ](/sequence-files/IGVFFI2930PAYZ/), [IGVFFI5493LLRO](/sequence-files/IGVFFI5493LLRO/), [IGVFFI0107ZPQB](/sequence-files/IGVFFI0107ZPQB/), [IGVFFI9749IBXF](/sequence-files/IGVFFI9749IBXF/), [IGVFFI3585MBYB](/sequence-files/IGVFFI3585MBYB/), [IGVFFI3037YHVZ](/sequence-files/IGVFFI3037YHVZ/), [IGVFFI4435GQBC](/sequence-files/IGVFFI4435GQBC/), [IGVFFI9959VOXF](/sequence-files/IGVFFI9959VOXF/), [IGVFFI8425IBKP](/sequence-files/IGVFFI8425IBKP/), [IGVFFI4569XAWR](/sequence-files/IGVFFI4569XAWR/), [IGVFFI9649BAQU](/sequence-files/IGVFFI9649BAQU/), [IGVFFI5736XJTC](/sequence-files/IGVFFI5736XJTC/), [IGVFFI5478DROE](/sequence-files/IGVFFI5478DROE/), [IGVFFI3023GTGL](/sequence-files/IGVFFI3023GTGL/), [IGVFFI7522RYZS](/sequence-files/IGVFFI7522RYZS/), [IGVFFI9549IOAW](/sequence-files/IGVFFI9549IOAW/), [IGVFFI6157IKDE](/sequence-files/IGVFFI6157IKDE/), [IGVFFI2733TORX](/sequence-files/IGVFFI2733TORX/), [IGVFFI2256WABA](/sequence-files/IGVFFI2256WABA/), [IGVFFI1243NKNI](/sequence-files/IGVFFI1243NKNI/), [IGVFFI7952PGYG](/sequence-files/IGVFFI7952PGYG/), [IGVFFI6058QTDD](/sequence-files/IGVFFI6058QTDD/), [IGVFFI6851KBBB](/sequence-files/IGVFFI6851KBBB/), [IGVFFI7465UGUQ](/sequence-files/IGVFFI7465UGUQ/), [IGVFFI3057ZJKD](/sequence-files/IGVFFI3057ZJKD/), [IGVFFI9107KDEP](/sequence-files/IGVFFI9107KDEP/), [IGVFFI1810SCSG](/sequence-files/IGVFFI1810SCSG/), [IGVFFI4646QREH](/sequence-files/IGVFFI4646QREH/), [IGVFFI6142AQUH](/sequence-files/IGVFFI6142AQUH/), [IGVFFI7839PZWY](/sequence-files/IGVFFI7839PZWY/), [IGVFFI9630INDK](/sequence-files/IGVFFI9630INDK/), [IGVFFI9824LCJE](/sequence-files/IGVFFI9824LCJE/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0974QLVO/"
}
],
"WARNING": [
{
"category": "missing auxiliary set",
"detail": "Measurement set [IGVFDS0974QLVO](/measurement-sets/IGVFDS0974QLVO/) has no cell sorting `auxiliary_sets`. CRISPR-based measurement sets that utilize flow cytometry are expected to link to a cell sorting auxiliary set.",
"level": 40,
"level_name": "WARNING",
"name": "audit_missing_auxiliary_set",
"path": "/measurement-sets/IGVFDS0974QLVO/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization",
"contact_pi": {
"@id": "/users/6c75dbfa-635e-4a7a-8ec8-9e51e9c380a4/",
"title": "Jesse Engreitz"
},
"title": "Stanford Center for Connecting DNA Variants to Function and Phenotype"
},
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{
"@id": "/measurement-sets/IGVFDS4869FXYY/",
"accession": "IGVFDS4869FXYY",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-Jurkat-PE2_Exp2_NegControl_AmpliconSequencing"
],
"status": "released"
}
],
"control_for": [],
"creation_timestamp": "2023-12-13T08:48:08.717525+00:00",
"donors": [
{
"@id": "/human-donors/IGVFDO1080XFGV/",
"accession": "IGVFDO1080XFGV",
"aliases": [
"igvf:donor_of_Jurkat"
],
"sex": "male",
"status": "released",
"taxa": "Homo sapiens"
}
],
"externally_hosted": false,
"file_set_type": "experimental data",
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"accession": "IGVFFI4142CADT",
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},
{
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},
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},
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},
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},
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"cyclophilin D",
"CyP-M",
"peptidyl-prolyl cis-trans isomerase F, mitochondrial",
"PPIase F"
]
}
],
"uuid": "908e6d73-bd3d-4c70-a99f-4f3f98b47a7a"
}