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INDEXED
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MeasurementSet
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IGVFDS0709NNUQ
IGVFDS0709NNUQ
released
GRU
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 205)
Protocols
https://www.protocols.io/view/share-seq-protocol-v2-2-di3y4gpw
Aliases
buenrostro-bernstein:scATAC Lib 584
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
21 items
1
2
3
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequence Specification Document
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0103DCSA
fastq
reads
R1
1040
Read 1
IGVFFI1204QHZQ
Illumina NovaSeq X
22773CLT3
652 MB
Jason Buenrostro, Broad
validated
IGVFFI0770QYPU
fastq
reads
R2
4085
Read 2
IGVFFI7261GPMQ
Illumina NovaSeq X
22523KLT3
304 MB
Jason Buenrostro, Broad
validated
IGVFFI0789BEKS
fastq
reads
I1
998
Barcode index
IGVFFI7430ROAE
Illumina NovaSeq X
22773CLT3
314 MB
Jason Buenrostro, Broad
validated
IGVFFI0955WDRS
fastq
reads
R1
956
Read 1
IGVFFI9405WSEH
Illumina NovaSeq X
22773CLT3
645 MB
Jason Buenrostro, Broad
validated
IGVFFI1460IXMM
fastq
reads
R1
1082
Read 1
IGVFFI9515WJJV
Illumina NovaSeq X
22773CLT3
649 MB
Jason Buenrostro, Broad
validated
IGVFFI2837NNPS
fastq
reads
R2
4049
Read 2
IGVFFI6705PSIP
Illumina NovaSeq X
22523KLT3
301 MB
Jason Buenrostro, Broad
validated
IGVFFI3189KKNV
fastq
reads
R1
4049
Read 1
IGVFFI6705PSIP
Illumina NovaSeq X
22523KLT3
671 MB
Jason Buenrostro, Broad
validated
IGVFFI3470DHOB
fastq
reads
R2
1040
Read 2
IGVFFI1204QHZQ
Illumina NovaSeq X
22773CLT3
287 MB
Jason Buenrostro, Broad
validated
IGVFFI3599ODYT
fastq
reads
I1
956
Barcode index
IGVFFI9405WSEH
Illumina NovaSeq X
22773CLT3
308 MB
Jason Buenrostro, Broad
validated
IGVFFI4329MSXG
fastq
reads
R1
998
Read 1
IGVFFI7430ROAE
Illumina NovaSeq X
22773CLT3
652 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4798GESQ
InVitroSystem
induced pluripotent stem cell
Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 205)
Donors
99 items
1
2
3
4
5
10
Accession
Aliases
Sex
Taxa
IGVFDO0123YZDN
buenrostro-bernstein:Donor 1943
unspecified
Homo sapiens
IGVFDO0211CZWE
buenrostro-bernstein:Donor 1909
unspecified
Homo sapiens
IGVFDO0279GJBF
buenrostro-bernstein:Donor 1937
unspecified
Homo sapiens
IGVFDO0417TJMX
buenrostro-bernstein:Donor 1907
unspecified
Homo sapiens
IGVFDO0436YOXD
buenrostro-bernstein:Donor 1745
unspecified
Homo sapiens
IGVFDO0508COBR
buenrostro-bernstein:Donor 1963
unspecified
Homo sapiens
IGVFDO0948FTCE
buenrostro-bernstein:Donor 1952
unspecified
Homo sapiens
IGVFDO0980QZSD
buenrostro-bernstein:Donor 1946
unspecified
Homo sapiens
IGVFDO1064GZAS
buenrostro-bernstein:Donor 1982
unspecified
Homo sapiens
IGVFDO1255IJEH
buenrostro-bernstein:Donor 1975
unspecified
Homo sapiens
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5543NUGL
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
buenrostro-bernstein:scRNA Lib 453
Jason Buenrostro, Broad