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IGVFDS0698PXMG

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File Set Type
experimental data
Summary
single-nucleus RNA sequencing assay (10x multiome)
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
  • multiplexed sample: Homo sapiens (female, 88 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 75 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples
Protocols
Aliases
igvf:corces_measurementSet_X023_G5_RNA

Sequencing Results (Illumina)

4 items
Read Names
fastq
reads
R1
1
Read 1
HV7TNDSX5
2
12 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I2
1
HV7TNDSX5
2
1.4 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
I1
1
HV7TNDSX5
2
1.2 GB
Ryan Corces, Gladstone Institute UCSF
validated
fastq
reads
R2
1
Read 2
HV7TNDSX5
2
10 GB
Ryan Corces, Gladstone Institute UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Associated Construct Library Sets
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female, 88 years) cerebellar cortex tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 75 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples

Donors

12 items
Aliases
  • igvf:corces_donor_BANN1344
female
Homo sapiens
  • igvf:corces_donor_BANN1506
male
Homo sapiens
  • igvf:corces_donor_BANN1340
male
Homo sapiens
  • igvf:corces_donor_BANN0348
male
Homo sapiens
  • igvf:corces_donor_BANN1839
female
Homo sapiens
  • igvf:corces_donor_BANN0912
male
Homo sapiens
  • igvf:corces_donor_BANN0124
male
Homo sapiens
  • igvf:corces_donor_BANN0210
male
Homo sapiens
  • igvf:corces_donor_BANN1201
male
Homo sapiens
  • igvf:corces_donor_BANN0621
male
Homo sapiens

Related Multiome Datasets

1 item
Accession
Type
Summary
Aliases
Lab
MeasurementSet
single-nucleus ATAC-seq (10x multiome)
  • igvf:corces_measurementSet_X023_G5_ATAC
Ryan Corces, Gladstone Institute UCSF

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF