Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
MeasurementSet
/
IGVFDS0356VCIO
IGVFDS0356VCIO
released
Json view
File Set Type
experimental data
Summary
Parse SPLiT-seq
Assay Term
single-nucleus RNA sequencing assay
Sample Summaries
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples
Protocols
https://www.protocols.io/view/evercode-single-index-pcr-5jyl82k9rl2w/v1
https://www.protocols.io/view/evercode-wt-v2-2-1-eq2lyj9relx9/v1
https://www.protocols.io/view/protocol-to-isolate-and-fix-nuclei-from-cryopreser-4r3l22y2pl1y/v1
Aliases
ali-mortazavi:B01_13H_illumina
Sequencing Results (Illumina)
4 items
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2206OHYA
fastq
reads
R1
2
IGVFFI0339PWMG
Illumina NextSeq 2000
AAC2JNKHV
1
10 GB
Ali Mortazavi, UCI
validated
IGVFFI7638IJFU
fastq
reads
R1
1
IGVFFI6996TJFS
Illumina NextSeq 2000
AAC2L2NHV
1
10 GB
Ali Mortazavi, UCI
validated
IGVFFI8607JKQU
fastq
reads
R2
2
IGVFFI0339PWMG
Illumina NextSeq 2000
AAC2JNKHV
1
6.0 GB
Ali Mortazavi, UCI
validated
IGVFFI8619SLHX
fastq
reads
R2
1
IGVFFI6996TJFS
Illumina NextSeq 2000
AAC2L2NHV
1
5.7 GB
Ali Mortazavi, UCI
validated
Samples
Donors
Assay Details
Sequencing Library Types
mRNA enriched
File Sets Using This Measurement Set as an Input
Attribution
Award
HG012077
Principal Investigator(s)
Lior Pachter
,
Kim Green
,
Grant MacGregor
,
Ali Mortazavi
,
Barbara Wold
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI