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INDEXED
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MeasurementSet
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IGVFDS0059HMSM
IGVFDS0059HMSM
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens (female, 19 years) bone marrow cell (cellular sub pool: SS-PKR 3)
Protocols
https://www.protocols.io/view/share-seq-v1-bmbik2ke
Aliases
bradley-bernstein:scATAC Lib 14
buenrostro-bernstein:scATAC Lib 14
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0585LIII
fastq
reads
R1
2263
Illumina NovaSeq 6000
414 MB
Jason Buenrostro, Broad
validated
IGVFFI1699UNLW
fastq
reads
R2
2359
Illumina NovaSeq 6000
711 MB
Jason Buenrostro, Broad
validated
IGVFFI2538HDIP
fastq
reads
R2
1689
Illumina NovaSeq 6000
2.8 KB
Jason Buenrostro, Broad
validated
IGVFFI3398FCKN
fastq
reads
R2
2551
Illumina NovaSeq 6000
704 MB
Jason Buenrostro, Broad
validated
IGVFFI3501QRSH
fastq
reads
R2
1593
Illumina NovaSeq 6000
2.5 KB
Jason Buenrostro, Broad
validated
IGVFFI4954AIUL
fastq
reads
R1
1401
Illumina NovaSeq 6000
1.2 KB
Jason Buenrostro, Broad
validated
IGVFFI5306ABJK
fastq
reads
R1
2359
Illumina NovaSeq 6000
416 MB
Jason Buenrostro, Broad
validated
IGVFFI5335BCCH
fastq
reads
R1
1497
Illumina NovaSeq 6000
1.9 KB
Jason Buenrostro, Broad
validated
IGVFFI5884ACTI
fastq
reads
R1
1689
Illumina NovaSeq 6000
1.7 KB
Jason Buenrostro, Broad
validated
IGVFFI6580RIDK
fastq
reads
R2
1401
Illumina NovaSeq 6000
2.1 KB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM7081AOVO
PrimaryCell
bone marrow
Homo sapiens (female, 19 years) bone marrow cell (cellular sub pool: SS-PKR 3)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO2605CUSL
bradley-bernstein:Donor 1508
buenrostro-bernstein:Donor 1508
female
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5278IBSB
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
buenrostro-bernstein:human-bone-marrow-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS2528FCFL
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 14
buenrostro-bernstein:scRNA Lib 14
Jason Buenrostro, Broad