{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0059HMSM",
"aliases": [
"bradley-bernstein:scATAC Lib 14",
"buenrostro-bernstein:scATAC Lib 14"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM7081AOVO](/primary-cells/IGVFSM7081AOVO/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM7081AOVO/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0059HMSM](/measurement-sets/IGVFDS0059HMSM/) has sequence file(s): [IGVFFI5884ACTI](/sequence-files/IGVFFI5884ACTI/), [IGVFFI4954AIUL](/sequence-files/IGVFFI4954AIUL/), [IGVFFI2538HDIP](/sequence-files/IGVFFI2538HDIP/), [IGVFFI5335BCCH](/sequence-files/IGVFFI5335BCCH/), [IGVFFI6987FEDV](/sequence-files/IGVFFI6987FEDV/), [IGVFFI8753CUOK](/sequence-files/IGVFFI8753CUOK/), [IGVFFI1699UNLW](/sequence-files/IGVFFI1699UNLW/), [IGVFFI6580RIDK](/sequence-files/IGVFFI6580RIDK/), [IGVFFI5306ABJK](/sequence-files/IGVFFI5306ABJK/), [IGVFFI9575WJWE](/sequence-files/IGVFFI9575WJWE/), [IGVFFI8287DJZT](/sequence-files/IGVFFI8287DJZT/), [IGVFFI3501QRSH](/sequence-files/IGVFFI3501QRSH/), [IGVFFI9832TOAJ](/sequence-files/IGVFFI9832TOAJ/), [IGVFFI0585LIII](/sequence-files/IGVFFI0585LIII/), [IGVFFI9965MZCL](/sequence-files/IGVFFI9965MZCL/), [IGVFFI3398FCKN](/sequence-files/IGVFFI3398FCKN/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0059HMSM/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS0059HMSM](/measurement-sets/IGVFDS0059HMSM/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS0059HMSM/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 3), female, Homo sapiens (19 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:25:18.933011+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "4908921d-126d-482f-9570-a22ebe8aace4"
}