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INDEXED
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MeasurementSet
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IGVFDS0001EZIS
IGVFDS0001EZIS
released
Json view
File Set Type
experimental data
Summary
single-cell ATAC-seq (SHARE-seq)
Assay Term
single-cell ATAC-seq
Sample Summaries
Homo sapiens (male, 37 years) bone marrow cell (cellular sub pool: SS-PKR 6)
Protocols
https://www.protocols.io/view/share-seq-v1-bmbik2ke
Aliases
bradley-bernstein:scATAC Lib 36
buenrostro-bernstein:scATAC Lib 36
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Results (Illumina)
16 items
1
2
Accession
File Format
Content Type
Illumina Read Type
Sequencing Run
Read Names
Associated seqspec Files
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0138FPSZ
fastq
reads
R1
2499
Illumina NovaSeq 6000
493 MB
Jason Buenrostro, Broad
validated
IGVFFI1268FQKI
fastq
reads
R2
1637
Illumina NovaSeq 6000
126 KB
Jason Buenrostro, Broad
validated
IGVFFI1452NGZQ
fastq
reads
R1
2307
Illumina NovaSeq 6000
492 MB
Jason Buenrostro, Broad
validated
IGVFFI5122JSBD
fastq
reads
R2
2499
Illumina NovaSeq 6000
845 MB
Jason Buenrostro, Broad
validated
IGVFFI5192DESO
fastq
reads
R1
1637
Illumina NovaSeq 6000
59 KB
Jason Buenrostro, Broad
validated
IGVFFI5320GAUB
fastq
reads
R1
1541
Illumina NovaSeq 6000
65 KB
Jason Buenrostro, Broad
validated
IGVFFI5610ZDAK
fastq
reads
R2
1541
Illumina NovaSeq 6000
141 KB
Jason Buenrostro, Broad
validated
IGVFFI5613CZNF
fastq
reads
R1
1733
Illumina NovaSeq 6000
63 KB
Jason Buenrostro, Broad
validated
IGVFFI5687JIOY
fastq
reads
R2
2403
Illumina NovaSeq 6000
852 MB
Jason Buenrostro, Broad
validated
IGVFFI5923XLTN
fastq
reads
R2
2595
Illumina NovaSeq 6000
843 MB
Jason Buenrostro, Broad
validated
Samples
1 item
Accession
Type
Sample Terms
Associated Construct Library Sets
Summary
IGVFSM4247WODL
PrimaryCell
bone marrow
Homo sapiens (male, 37 years) bone marrow cell (cellular sub pool: SS-PKR 6)
Donors
1 item
Accession
Aliases
Sex
Taxa
IGVFDO8099ZPMK
bradley-bernstein:Donor 1507
buenrostro-bernstein:Donor 1507
male
Homo sapiens
File Sets Using This Measurement Set as an Input
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS5278IBSB
AnalysisSet
SHARE-seq: fragments, sparse gene count matrix
buenrostro-bernstein:human-bone-marrow-analysis-set
Jason Buenrostro, Broad
Related Multiome Datasets
1 item
Accession
Type
Summary
Aliases
Lab
IGVFDS6965XHYL
MeasurementSet
single-cell RNA sequencing assay (SHARE-seq)
bradley-bernstein:scRNA Lib 36
buenrostro-bernstein:scRNA Lib 36
Jason Buenrostro, Broad