{
"@context": "/terms/",
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"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS0001EZIS",
"aliases": [
"bradley-bernstein:scATAC Lib 36",
"buenrostro-bernstein:scATAC Lib 36"
],
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"status": "released",
"term_name": "single-cell ATAC-seq"
},
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released primary cell [IGVFSM4247WODL](/primary-cells/IGVFSM4247WODL/) has in progress subobject source [jason-buenrostro](/sources/jason-buenrostro/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/primary-cells/IGVFSM4247WODL/"
},
{
"category": "missing sequence specification",
"detail": "Measurement set [IGVFDS0001EZIS](/measurement-sets/IGVFDS0001EZIS/) has sequence file(s): [IGVFFI7326DGHF](/sequence-files/IGVFFI7326DGHF/), [IGVFFI6643WQEA](/sequence-files/IGVFFI6643WQEA/), [IGVFFI1268FQKI](/sequence-files/IGVFFI1268FQKI/), [IGVFFI1452NGZQ](/sequence-files/IGVFFI1452NGZQ/), [IGVFFI5610ZDAK](/sequence-files/IGVFFI5610ZDAK/), [IGVFFI5192DESO](/sequence-files/IGVFFI5192DESO/), [IGVFFI6514ZEXF](/sequence-files/IGVFFI6514ZEXF/), [IGVFFI9701EXUP](/sequence-files/IGVFFI9701EXUP/), [IGVFFI5320GAUB](/sequence-files/IGVFFI5320GAUB/), [IGVFFI5613CZNF](/sequence-files/IGVFFI5613CZNF/), [IGVFFI6076SSHS](/sequence-files/IGVFFI6076SSHS/), [IGVFFI5687JIOY](/sequence-files/IGVFFI5687JIOY/), [IGVFFI8068LJXV](/sequence-files/IGVFFI8068LJXV/), [IGVFFI5923XLTN](/sequence-files/IGVFFI5923XLTN/), [IGVFFI5122JSBD](/sequence-files/IGVFFI5122JSBD/), [IGVFFI0138FPSZ](/sequence-files/IGVFFI0138FPSZ/) which do not have any `seqspecs`. Sequence files in a file set are expected to link to a sequence specification file.",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_missing_seqspec",
"path": "/measurement-sets/IGVFDS0001EZIS/"
}
],
"WARNING": [
{
"category": "missing barcode onlist",
"detail": "Measurement set [IGVFDS0001EZIS](/measurement-sets/IGVFDS0001EZIS/) has an `assay_term` of single-cell ATAC-seq but no `onlist_files` nor `onlist_methods`. Measurement sets to be processed via the single cell uniform pipeline are expected to have onlist files and onlist methods indicated.",
"level": 40,
"level_name": "WARNING",
"name": "audit_onlist",
"path": "/measurement-sets/IGVFDS0001EZIS/"
}
]
},
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"title": "Jason Buenrostro"
},
"title": "A foundational resource of functional elements, TF footprints and gene regulatory interactions"
},
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"accession": "IGVFSM4247WODL",
"aliases": [
"bradley-bernstein:BioSam 4568_SS-PKR 6",
"buenrostro-bernstein:BioSam 4568_SS-PKR 6"
],
"classifications": [
"primary cell"
],
"sample_terms": [
{
"@id": "/sample-terms/UBERON_0002371/",
"@type": [
"SampleTerm",
"OntologyTerm",
"Item"
],
"status": "released",
"summary": "bone marrow",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "bone marrow cell (cellular sub pool: SS-PKR 6), male, Homo sapiens (37 years)",
"taxa": "Homo sapiens"
}
],
"schema_version": "23",
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_files_timestamp": "2024-02-12T21:47:24.088235+00:00",
"summary": "single-cell ATAC-seq (SHARE-seq)",
"uuid": "c66fbb4a-e971-4380-838c-265552149c59"
}