IGVFFI8270PCLP

released
validated
File Set
IGVFDS4021XJLW(scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
File Format
tar
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
jay-shendure:analysis_set_CRISPRa_ipscNeurons_matrix
md5sum
74f680c462be327668de999714551c92
Content MD5sum
ebdde5e8706a0a415c85255819666c5f
File Size
442 MB
Submitted File Name
/net/shendure/vol10/projects/IGVFtemp/Shendure_IpscNeurons_CRISPRa_matrix.tar.gz

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

Samples

4 items
Sample Terms
Summary
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days (cellular sub pool: 10Xlane1), male, Homo sapiens modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days (cellular sub pool: 10Xlane3), male, Homo sapiens modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days (cellular sub pool: 10Xlane4), male, Homo sapiens modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library
InVitroSystem
GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days (cellular sub pool: 10Xlane2), male, Homo sapiens modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
873 MB
validated

Files This File Derives From

64 items
fastq
reads
Jay Shendure, UW
310 MB
validated
fastq
reads
Jay Shendure, UW
5.1 GB
validated
fastq
reads
Jay Shendure, UW
1.1 GB
validated
fastq
reads
Jay Shendure, UW
747 MB
validated
fastq
reads
Jay Shendure, UW
628 MB
validated
fastq
reads
Jay Shendure, UW
642 MB
validated
fastq
reads
Jay Shendure, UW
422 MB
validated
fastq
reads
Jay Shendure, UW
4.8 GB
validated
fastq
reads
Jay Shendure, UW
559 MB
validated
fastq
reads
Jay Shendure, UW
4.7 GB
validated

Attribution