IGVFFI8270PCLP

released
validated
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    "accession": "IGVFFI8270PCLP",
    "aliases": [
        "jay-shendure:analysis_set_CRISPRa_ipscNeurons_matrix"
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    "analysis_step_version": "/analysis-step-versions/a958f5b0-0c40-46ec-82e9-db6b2b849244/",
    "assay_titles": [
        "scCRISPR screen"
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    "audit": {},
    "award": {
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        "component": "functional characterization"
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    "content_md5sum": "ebdde5e8706a0a415c85255819666c5f",
    "content_summary": "cell by gene in sparse gene count matrix",
    "content_type": "sparse gene count matrix",
    "creation_timestamp": "2023-12-13T00:09:58.340992+00:00",
    "derived_from": [
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    "file_format": "tar",
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        "@id": "/analysis-sets/IGVFDS4021XJLW/",
        "accession": "IGVFDS4021XJLW",
        "file_set_type": "principal analysis",
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                "@id": "/in-vitro-systems/IGVFSM8382KOXO/",
                "accession": "IGVFSM8382KOXO",
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                        "@id": "/sample-terms/EFO_0009747/",
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                "targeted_sample_term": {
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                        "@id": "/crispr-modifications/426a4099-35d9-4c65-8851-5e788a3d4e70/",
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                        "@id": "/sample-terms/EFO_0009747/",
                        "term_name": "GM25256 (WTC-11)"
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                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days (cellular sub pool: 10Xlane3), male, Homo sapiens modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library",
                "targeted_sample_term": {
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                    "term_name": "neuron"
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                "taxa": "Homo sapiens"
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                "sample_terms": [
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                        "@id": "/sample-terms/EFO_0009747/",
                        "term_name": "GM25256 (WTC-11)"
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                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days (cellular sub pool: 10Xlane1), male, Homo sapiens modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library",
                "targeted_sample_term": {
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                    "term_name": "neuron"
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                "taxa": "Homo sapiens"
            },
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                "@id": "/in-vitro-systems/IGVFSM9913PXTT/",
                "accession": "IGVFSM9913PXTT",
                "classifications": [
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                "modifications": [
                    {
                        "@id": "/crispr-modifications/426a4099-35d9-4c65-8851-5e788a3d4e70/",
                        "modality": "activation",
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                    }
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "summary": "GM25256 (WTC-11) differentiated cell specimen induced to neuron for 19 days (cellular sub pool: 10Xlane2), male, Homo sapiens modified with CRISPRa Sp-dCas9-VPH, transfected with a guide library",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000540/",
                    "term_name": "neuron"
                },
                "taxa": "Homo sapiens"
            }
        ],
        "summary": "scCRISPR activation screen: differential gene expression quantifications, sparse gene count matrix"
    },
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    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI8270PCLP/@@download/IGVFFI8270PCLP.tar.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/jay-shendure/",
        "title": "Jay Shendure, UW"
    },
    "loci_list_for": [],
    "md5sum": "74f680c462be327668de999714551c92",
    "principal_dimension": "cell",
    "reference_files": [
        "/reference-files/IGVFFI0653VCGH/"
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    "release_timestamp": "2024-08-13T20:47:22.150893+00:00",
    "s3_uri": "s3://igvf-files/2023/12/13/543c9f4e-1511-4167-8a5b-843c99af20b3/IGVFFI8270PCLP.tar.gz",
    "schema_version": "7",
    "secondary_dimensions": [
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    "status": "released",
    "submitted_by": {
        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
        "title": "Beth Martin"
    },
    "submitted_file_name": "/net/shendure/vol10/projects/IGVFtemp/Shendure_IpscNeurons_CRISPRa_matrix.tar.gz",
    "summary": "cell by gene in sparse gene count matrix",
    "upload_status": "validated",
    "uuid": "543c9f4e-1511-4167-8a5b-843c99af20b3"
}