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IGVFFI6053CXKY

preview
validated
This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4340KVZI(single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome))
Summary
cell by gene expression in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/e904b252-f348-4c6d-835c-5ae6bf91b9a0/
File Format
hdf5
Content Type
raw feature barcode matrix
Content Summary
cell by gene expression in raw feature barcode matrix
Aliases
harinder-singh:Bcells_don1_pitt_multiome_day012_gex_molecule_info_mtx
md5sum
1f2c1bda4079154b978c00a6c9982d8f
File Size
393 MB
Submitted File Name
/ix/djishnu/Common_Folder/Jingyu_Data/multiome_1st_donor_UPMC_day0_2/outs/gex_molecule_info.h5
Checkfiles Version
v20
Attribution
Harinder Singh, University of Pittsburgh

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene expression

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Format specification for gex_molecule_info.h5 files derived from cellranger arc
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
gtf
transcriptome reference
GRCh38 GENCODE 32 transcriptome reference
Ansuman Satpathy, Stanford
55 MB
validated

Files This File Derives From

24 items
fastq
reads
Harinder Singh, University of Pittsburgh
379 MB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
2.3 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
4.2 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
914 MB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
385 MB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
4.1 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
2.3 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
1.2 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
1.2 GB
validated
fastq
reads
Harinder Singh, University of Pittsburgh
909 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
filtered feature barcode matrix
cell by gene expression by peak in filtered feature barcode matrix
Harinder Singh, University of Pittsburgh
514 MB
validated