IGVFFI6053CXKY

preview
validated
{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI6053CXKY/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI6053CXKY",
    "aliases": [
        "harinder-singh:Bcells_don1_pitt_multiome_day012_gex_molecule_info_mtx"
    ],
    "analysis_step_version": "/analysis-step-versions/e904b252-f348-4c6d-835c-5ae6bf91b9a0/",
    "assay_titles": [
        "10x multiome"
    ],
    "audit": {
        "INTERNAL_ACTION": [
            {
                "category": "mismatched status",
                "detail": "Preview matrix file [IGVFFI6053CXKY](/matrix-files/IGVFFI6053CXKY/) has in progress subobject reference file [IGVFFI0493XRYZ](/reference-files/IGVFFI0493XRYZ/).",
                "level": 30,
                "level_name": "INTERNAL_ACTION",
                "name": "audit_item_status",
                "path": "/matrix-files/IGVFFI6053CXKY/"
            }
        ]
    },
    "award": {
        "@id": "/awards/HG012041/",
        "component": "networks"
    },
    "checkfiles_version": "v20",
    "content_summary": "cell by gene expression in raw feature barcode matrix",
    "content_type": "raw feature barcode matrix",
    "creation_timestamp": "2025-04-02T02:03:12.207002+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI0633YPSK/",
        "/sequence-files/IGVFFI3557HDSC/",
        "/sequence-files/IGVFFI8208VRGS/",
        "/sequence-files/IGVFFI4844LRLJ/",
        "/sequence-files/IGVFFI4355VZKC/",
        "/sequence-files/IGVFFI3653OYSB/",
        "/sequence-files/IGVFFI0486KRGW/",
        "/sequence-files/IGVFFI2989ICSG/",
        "/sequence-files/IGVFFI3433YEFI/",
        "/sequence-files/IGVFFI3739JOEC/",
        "/sequence-files/IGVFFI9249PWWE/",
        "/sequence-files/IGVFFI8641BMYV/",
        "/sequence-files/IGVFFI5849BWNL/",
        "/sequence-files/IGVFFI3482VZAG/",
        "/sequence-files/IGVFFI4080SDQJ/",
        "/sequence-files/IGVFFI7615HIGI/",
        "/sequence-files/IGVFFI7400ROID/",
        "/sequence-files/IGVFFI3708MZMR/",
        "/sequence-files/IGVFFI3333MNRU/",
        "/sequence-files/IGVFFI3613ESHP/",
        "/sequence-files/IGVFFI9945HRIU/",
        "/sequence-files/IGVFFI9998MEBG/",
        "/sequence-files/IGVFFI2105ICHL/",
        "/sequence-files/IGVFFI2337CWXJ/"
    ],
    "file_format": "hdf5",
    "file_format_specifications": [
        {
            "@id": "/documents/b6be3366-625f-4981-bce5-b13a98c94db3/",
            "description": "Format specification for gex_molecule_info.h5 files  derived from cellranger arc"
        }
    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS4340KVZI/",
        "@type": [
            "AnalysisSet",
            "FileSet",
            "Item"
        ],
        "accession": "IGVFDS4340KVZI",
        "controlled_access": true,
        "data_use_limitation_summaries": [
            "HMB"
        ],
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM8093SHHZ/",
                "@type": [
                    "InVitroSystem",
                    "Biosample",
                    "Sample",
                    "Item"
                ],
                "accession": "IGVFSM8093SHHZ",
                "classifications": [
                    "differentiated cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0000236/",
                        "status": "released",
                        "term_name": "B cell"
                    }
                ],
                "status": "preview",
                "summary": "Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 2 days",
                "targeted_sample_term": {
                    "@id": "/sample-terms/CL_0000980/",
                    "status": "released",
                    "term_name": "plasmablast"
                },
                "taxa": "Homo sapiens"
            }
        ],
        "status": "preview",
        "summary": "single-nucleus ATAC-seq (10x multiome), single-nucleus RNA sequencing assay (10x multiome)"
    },
    "file_size": 392568814,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI6053CXKY/@@download/IGVFFI6053CXKY.h5",
    "input_file_for": [
        "/matrix-files/IGVFFI3586OAIM/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/harinder-singh/",
        "title": "Harinder Singh, University of Pittsburgh"
    },
    "loci_list_for": [],
    "md5sum": "1f2c1bda4079154b978c00a6c9982d8f",
    "principal_dimension": "cell",
    "quality_metrics": [],
    "reference_files": [
        "/reference-files/IGVFFI0493XRYZ/",
        "/reference-files/IGVFFI5429KKCK/"
    ],
    "s3_uri": "s3://igvf-files/2025/04/02/ed335caa-d768-4965-ae98-96d4b4cc67f0/IGVFFI6053CXKY.h5",
    "schema_version": "7",
    "secondary_dimensions": [
        "gene expression"
    ],
    "status": "preview",
    "submitted_by": {
        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
        "title": "Nicholas Pease"
    },
    "submitted_file_name": "/ix/djishnu/Common_Folder/Jingyu_Data/multiome_1st_donor_UPMC_day0_2/outs/gex_molecule_info.h5",
    "summary": "cell by gene expression in raw feature barcode matrix",
    "upload_status": "validated",
    "uuid": "ed335caa-d768-4965-ae98-96d4b4cc67f0",
    "workflow": {
        "@id": "/workflows/IGVFWF8495CUNO/",
        "name": "Singh Single Cell Multiome Workflow",
        "uniform_pipeline": false
    }
}