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IGVFFI6010GAMJ

released
validated
File Set
IGVFDS0638LBOQ(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/
File Format
tar
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
md5sum
1d723992d9357e4a6170cd4325b546f6
Content MD5sum
1d069481f295ea0b75c3af8bcee9e327
File Size
233 MB
Submitted File Name
igvf_005/igvf_005_Subpool_EX_total+core.tar.gz
Checkfiles Version
v20
Attribution
Ali Mortazavi, UCI

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
File format description for tar.gz archives of kallisto matrix market output
file format specification

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

2 items
fastq
reads
Ali Mortazavi, UCI
22 GB
validated
fastq
reads
Ali Mortazavi, UCI
13 GB
validated

Files Derived From This File

2 items
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
54 GB
validated
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
98 GB
validated