IGVFFI6010GAMJ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI6010GAMJ/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6010GAMJ",
10    "analysis_step_version": "/analysis-step-versions/7575fac5-2297-495f-ad92-000d9acf05f6/",
11    "assay_titles": [
12        "Parse SPLiT-seq"
13    ],
14    "audit": {},
15    "award": {
16        "@id": "/awards/HG012077/",
17        "component": "mapping"
18    },
19    "checkfiles_version": "v20",
20    "content_md5sum": "1d069481f295ea0b75c3af8bcee9e327",
21    "content_summary": "cell by gene in sparse gene count matrix",
22    "content_type": "sparse gene count matrix",
23    "creation_timestamp": "2025-04-06T22:40:57.046533+00:00",
24    "derived_from": [
25        "/sequence-files/IGVFFI2668MCMX/",
26        "/sequence-files/IGVFFI1336KPGX/"
27    ],
28    "file_format": "tar",
29    "file_format_specifications": [
30        "/documents/2cee36ca-8fc9-4918-8138-4f98384ee19a/"
31    ],
32    "file_set": {
33        "@id": "/analysis-sets/IGVFDS0638LBOQ/",
34        "@type": [
35            "AnalysisSet",
36            "FileSet",
37            "Item"
38        ],
39        "accession": "IGVFDS0638LBOQ",
40        "file_set_type": "intermediate analysis",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM2693EVCR/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM2693EVCR",
50                "classifications": [
51                    "tissue",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/UBERON_0000007/",
59                        "status": "released",
60                        "term_name": "pituitary gland"
61                    },
62                    {
63                        "@id": "/sample-terms/UBERON_0001898/",
64                        "status": "released",
65                        "term_name": "hypothalamus"
66                    },
67                    {
68                        "@id": "/sample-terms/UBERON_0002107/",
69                        "status": "released",
70                        "term_name": "liver"
71                    }
72                ],
73                "status": "released",
74                "summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples",
75                "taxa": "Mus musculus",
76                "treatments": []
77            }
78        ],
79        "status": "released",
80        "summary": "Parse SPLiT-seq: sparse gene count matrix"
81    },
82    "file_size": 232996168,
83    "gene_list_for": [],
84    "href": "/matrix-files/IGVFFI6010GAMJ/@@download/IGVFFI6010GAMJ.tar.gz",
85    "input_file_for": [
86        "/matrix-files/IGVFFI8712OENP/",
87        "/matrix-files/IGVFFI1622ZYWL/"
88    ],
89    "integrated_in": [],
90    "lab": {
91        "@id": "/labs/ali-mortazavi/",
92        "title": "Ali Mortazavi, UCI"
93    },
94    "loci_list_for": [],
95    "md5sum": "1d723992d9357e4a6170cd4325b546f6",
96    "principal_dimension": "cell",
97    "quality_metrics": [
98        "/single-cell-rna-seq-quality-metrics/d6cfa0b5-fb54-4481-9a45-a3ec6d0b253a/"
99    ],
100    "reference_files": [
101        "/reference-files/IGVFFI9282QLXO/",
102        "/reference-files/IGVFFI9744VSJF/"
103    ],
104    "release_timestamp": "2025-04-19T03:14:04.379543+00:00",
105    "s3_uri": "s3://igvf-files/2025/04/06/a58d83a1-9a05-4a63-9ea0-e1f50aa755b7/IGVFFI6010GAMJ.tar.gz",
106    "schema_version": "7",
107    "secondary_dimensions": [
108        "gene"
109    ],
110    "status": "released",
111    "submitted_by": {
112        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
113        "title": "Diane Trout"
114    },
115    "submitted_file_name": "igvf_005/igvf_005_Subpool_EX_total+core.tar.gz",
116    "summary": "cell by gene in sparse gene count matrix",
117    "upload_status": "validated",
118    "uuid": "a58d83a1-9a05-4a63-9ea0-e1f50aa755b7",
119    "workflow": {
120        "@id": "/workflows/IGVFWF6241JYDF/",
121        "name": "UCI snRNA-seq workflow"
122    }
123}