IGVFFI4195HOBE

released

validated

File Set

IGVFDS3114UZXE(single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq): cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)

Summary

cell by gene in raw feature barcode matrix

Analysis Step Version

/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/

File Format

hdf5

Content Type

raw feature barcode matrix

Content Summary

cell by gene in raw feature barcode matrix

Aliases

ansuman-satpathy:igvf15_raw_rna_counts_10x3

md5sum

b5a96b84d0b0344409117f4b607aacb6

File Size

181 MB

Submitted File Name

/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf15/e15l3_raw_feature_bc_matrix.h5

Checkfiles Version

v14

Attribution

Ansuman Satpathy, Stanford

(

HG011972 — Jesse Engreitz

)

Matrix Details

Principal Dimension

cell

Secondary Dimensions

gene

File Format Specifications

1 item

Page

Description

Type

Download

Preview

Raw RNA count matrix definition for 10x multiome

file format specification

raw_rna_count_marix_format.pdf

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1624SZQN

MultiplexedSample

GM25256 (WTC-11)

multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples