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IGVFFI4195HOBE

released
validated
File Set
IGVFDS6039JXBR(10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix)
Summary
cell by gene in raw feature barcode matrix
Analysis Step Version
/analysis-step-versions/072beaf9-db5c-4bb3-9d63-e5cf7ee29dd6/
File Format
hdf5
Content Type
raw feature barcode matrix
Content Summary
cell by gene in raw feature barcode matrix
Aliases
ansuman-satpathy:igvf15_raw_rna_counts_10x3
md5sum
b5a96b84d0b0344409117f4b607aacb6
File Size
181 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf15/e15l3_raw_feature_bc_matrix.h5
Checkfiles Version
v14

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Raw RNA count matrix definition for 10x multiome
file format specification

Samples

3 items
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples
MultiplexedSample
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples

Files This File Derives From

8 items
fastq
reads
Ansuman Satpathy, Stanford
9.8 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
21 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
9.7 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
21 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.5 GB
validated
fastq
reads
Ansuman Satpathy, Stanford
2.4 GB
validated

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford