{
"@context": "/terms/",
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"MatrixFile",
"File",
"Item"
],
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"aliases": [
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],
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"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI4195HOBE](/matrix-files/IGVFFI4195HOBE/) has in progress subobject reference file [IGVFFI3944QOJF](/reference-files/IGVFFI3944QOJF/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI4195HOBE/"
},
{
"category": "mismatched status",
"detail": "Released matrix file [IGVFFI4195HOBE](/matrix-files/IGVFFI4195HOBE/) has in progress subobject reference file [IGVFFI8311QXYM](/reference-files/IGVFFI8311QXYM/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/matrix-files/IGVFFI4195HOBE/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"checkfiles_version": "v14",
"content_summary": "cell by gene in raw feature barcode matrix",
"content_type": "raw feature barcode matrix",
"creation_timestamp": "2025-01-28T23:10:56.693577+00:00",
"derived_from": [
"/sequence-files/IGVFFI3004OSWB/",
"/sequence-files/IGVFFI2257BEVI/",
"/sequence-files/IGVFFI0531DTHB/",
"/sequence-files/IGVFFI2352UAUE/",
"/sequence-files/IGVFFI7156GLJL/",
"/sequence-files/IGVFFI4757UOHK/",
"/sequence-files/IGVFFI1948WQQH/",
"/sequence-files/IGVFFI1030UBEK/"
],
"file_format": "hdf5",
"file_format_specifications": [
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],
"file_set": {
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"accession": "IGVFDS6039JXBR",
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"samples": [
{
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"multiplexed sample"
],
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{
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"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
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"summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
},
{
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],
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"modifications": [],
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{
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"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
},
{
"@id": "/multiplexed-samples/IGVFSM0825LHRL/",
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"differentiated cell specimen",
"multiplexed sample"
],
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"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix"
},
"file_size": 181008580,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI4195HOBE/@@download/IGVFFI4195HOBE.h5",
"input_file_for": [],
"integrated_in": [],
"lab": {
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"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
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"principal_dimension": "cell",
"quality_metrics": [],
"reference_files": [
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],
"release_timestamp": "2025-03-07T06:05:14.805044+00:00",
"s3_uri": "s3://igvf-files/2025/01/28/ad7333b9-f652-4340-973f-c4df44beb7a6/IGVFFI4195HOBE.h5",
"schema_version": "7",
"secondary_dimensions": [
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],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/analysis_sets/igvf15/e15l3_raw_feature_bc_matrix.h5",
"summary": "cell by gene in raw feature barcode matrix",
"upload_status": "validated",
"uuid": "ad7333b9-f652-4340-973f-c4df44beb7a6",
"workflow": {
"@id": "/workflows/IGVFWF1453HVEC/",
"name": "Satpathy Cell Ranger",
"uniform_pipeline": false
}
}