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IGVFFI3038HSVX

released
validated
File Set
IGVFDS5278IBSB(SHARE-seq: fragments, sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
buenrostro-bernstein:human-bone-marrow-matrix
md5sum
77576542036e9867ff4bdb2615587e6a
File Size
639 MB
Submitted File Name
gs://broad-buenrostro-pipeline-genome-annotations/bone-marrow-rna/buen-human-bone-marrow-rna.h5
Checkfiles Version
Legacy version of checkfiles

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Specification of matrix h5 generated by https://github.com/masai1116/SHARE-seq-alignmentV2
file format specification

Samples

49 items
Sample Terms
Summary
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 7), female, Homo sapiens (19 years)
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (26 years)
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 3), male, Homo sapiens (29 years)
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 7), male, Homo sapiens (49 years)
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 5), female, Homo sapiens (19 years)
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 6), male, Homo sapiens (49 years)
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 8), male, Homo sapiens (26 years)
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 2), male, Homo sapiens (29 years)
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 7), male, Homo sapiens (37 years)
PrimaryCell
bone marrow cell (cellular sub pool: SS-PKR 7), male, Homo sapiens (26 years)

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

772 items
fastq
reads
Jason Buenrostro, Broad
410 MB
validated
fastq
reads
Jason Buenrostro, Broad
4.3 GB
validated
fastq
reads
Jason Buenrostro, Broad
269 MB
validated
fastq
reads
Jason Buenrostro, Broad
1.1 GB
validated
fastq
reads
Jason Buenrostro, Broad
3.2 GB
validated
fastq
reads
Jason Buenrostro, Broad
2.3 GB
validated
fastq
reads
Jason Buenrostro, Broad
1.7 GB
validated
fastq
reads
Jason Buenrostro, Broad
508 MB
validated
fastq
reads
Jason Buenrostro, Broad
974 MB
validated
fastq
reads
Jason Buenrostro, Broad
287 MB
validated

Attribution

Award
HG011986
Principal Investigator(s)
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad