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IGVFFI2561CRHD

released
validated
File Set
IGVFDS3636WTST(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/84d923e3-9027-4aaf-a611-eff429b4348c/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
ali-mortazavi:IGVF_B01_Subpool_6_filtered_denoised
md5sum
8ce04839b45849fe895f30bb06f5d94d
File Size
1.1 GB
Submitted File Name
Subpool_6_filtered_adata_denoised.h5ad

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples

Reference Files

2 items
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tar
sparse gene count matrix
Ali Mortazavi, UCI
435 MB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
7.1 GB
validated

Attribution

Award
HG012077
Principal Investigator(s)
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI