IGVFFI2561CRHD

{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI2561CRHD/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI2561CRHD",
    "aliases": [
        "ali-mortazavi:IGVF_B01_Subpool_6_filtered_denoised"
    ],
    "analysis_step_version": "/analysis-step-versions/84d923e3-9027-4aaf-a611-eff429b4348c/",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_summary": "cell by gene in sparse gene count matrix",
    "content_type": "sparse gene count matrix",
    "creation_timestamp": "2024-09-03T23:40:05.917302+00:00",
    "derived_from": [
        "/matrix-files/IGVFFI1237TMFC/"
    ],
    "file_format": "h5ad",
    "file_set": {
        "@id": "/analysis-sets/IGVFDS3636WTST/",
        "accession": "IGVFDS3636WTST",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM6546CQJB/",
                "accession": "IGVFSM6546CQJB",
                "classifications": [
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "summary": "Parse SPLiT-seq: sparse gene count matrix"
    },
    "file_size": 1137968456,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI2561CRHD/@@download/IGVFFI2561CRHD.h5ad",
    "input_file_for": [
        "/matrix-files/IGVFFI5345SNRS/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "loci_list_for": [],
    "md5sum": "8ce04839b45849fe895f30bb06f5d94d",
    "principal_dimension": "cell",
    "reference_files": [
        "/reference-files/IGVFFI9282QLXO/",
        "/reference-files/IGVFFI9744VSJF/"
    ],
    "release_timestamp": "2024-09-05T18:27:45.771185+00:00",
    "s3_uri": "s3://igvf-files/2024/09/03/eb5f4064-b9f2-40ae-8d44-d502772a4a1b/IGVFFI2561CRHD.h5ad",
    "schema_version": "7",
    "secondary_dimensions": [
        "gene"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "Subpool_6_filtered_adata_denoised.h5ad",
    "summary": "cell by gene in sparse gene count matrix",
    "upload_status": "validated",
    "uuid": "eb5f4064-b9f2-40ae-8d44-d502772a4a1b"
}