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IGVFFI2377NFOC

released
validated
File Set
IGVFDS7268XYPD(HiCAR: contact matrix)
Summary
genomic position by genomic position in contact matrix
Analysis Step Version
/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/
File Format
mcool
Content Type
contact matrix
Content Summary
genomic position by genomic position in contact matrix
Aliases
charles-gersbach:matrix-file-crispra-region3-mouse-hl1-targeted-hicar-rep3-mcool
md5sum
7cc5d55cb844d234b10a0f8badebbd5f
File Size
50 MB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/mouse/HL1_TA446_CA_3_ctrl.1000.mcool

Matrix Details

Principal Dimension
genomic position
Secondary Dimensions
genomic position

File Format Specifications

1 item
Page
Description
Type
Download
Preview
Contact matrix mcool files
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
983 MB
validated
fastq
reads
Charles Gersbach, Duke
1.1 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
cool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
11 MB
validated

Attribution

Award
HG012053
Principal Investigator(s)
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke