{
"@context": "/terms/",
"@id": "/matrix-files/IGVFFI2377NFOC/",
"@type": [
"MatrixFile",
"File",
"Item"
],
"accession": "IGVFFI2377NFOC",
"aliases": [
"charles-gersbach:matrix-file-crispra-region3-mouse-hl1-targeted-hicar-rep3-mcool"
],
"analysis_step_version": "/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/",
"assay_titles": [
"HiCAR"
],
"audit": {},
"award": {
"@id": "/awards/HG012053/",
"component": "functional characterization"
},
"content_summary": "genomic position by genomic position in contact matrix",
"content_type": "contact matrix",
"creation_timestamp": "2024-11-07T16:07:41.476505+00:00",
"derived_from": [
"/sequence-files/IGVFFI0417PVXJ/",
"/sequence-files/IGVFFI3699PKGX/"
],
"file_format": "mcool",
"file_format_specifications": [
"/documents/cb4a6813-68a9-4aff-af23-7d78a04dfc58/"
],
"file_set": {
"@id": "/analysis-sets/IGVFDS7268XYPD/",
"accession": "IGVFDS7268XYPD",
"file_set_type": "intermediate analysis",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM5017HPIL/",
"accession": "IGVFSM5017HPIL",
"classifications": [
"cell line"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022835/",
"status": "released",
"term_name": "HL-1"
}
],
"status": "released",
"summary": "HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library",
"taxa": "Mus musculus"
}
],
"status": "released",
"summary": "HiCAR: contact matrix"
},
"file_size": 49639434,
"gene_list_for": [],
"href": "/matrix-files/IGVFFI2377NFOC/@@download/IGVFFI2377NFOC.mcool",
"input_file_for": [
"/matrix-files/IGVFFI1509VTYC/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/charles-gersbach/",
"title": "Charles Gersbach, Duke"
},
"loci_list_for": [],
"md5sum": "7cc5d55cb844d234b10a0f8badebbd5f",
"principal_dimension": "genomic position",
"reference_files": [
"/reference-files/IGVFFI6815WBWB/"
],
"release_timestamp": "2024-12-13T19:43:28.323157+00:00",
"s3_uri": "s3://igvf-files/2024/11/07/6463fbb6-bf2b-4a32-b38c-f8a6ed0312dd/IGVFFI2377NFOC.mcool",
"schema_version": "7",
"secondary_dimensions": [
"genomic position"
],
"status": "released",
"submitted_by": {
"@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
"title": "Ruhi Rai"
},
"submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/mouse/HL1_TA446_CA_3_ctrl.1000.mcool",
"summary": "genomic position by genomic position in contact matrix",
"upload_status": "validated",
"uuid": "6463fbb6-bf2b-4a32-b38c-f8a6ed0312dd"
}