Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
MatrixFile
/
IGVFFI1577SBWN
IGVFFI1577SBWN
released
validated
Json view
File Set
IGVFDS8648GJCE
(Parse SPLiT-seq: sparse gene count matrix)
Summary
cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/84d923e3-9027-4aaf-a611-eff429b4348c/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
ali-mortazavi:IGVF_B01_Subpool_8_filtered_denoised
md5sum
c5cd06753c24fa892e63b8006f8c9563
File Size
947 MB
Submitted File Name
Subpool_8_filtered_adata_denoised.h5ad
Matrix Details
Principal Dimension
cell
Secondary Dimensions
gene
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2294BOOU
MultiplexedSample
left cerebral cortex
multiplexed sample: left cerebral cortex tissue, female, Mus musculus CASTJ (72 days); left cerebral cortex tissue, male, Mus musculus B6J (72 days); ... and 6 more samples
Reference Files
2 items
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9282QLXO
fasta
genome reference
GRCm39 genome reference
External Lab, Community
871 MB
validated
IGVFFI9744VSJF
gtf
transcriptome reference
GRCm39 GENCODE M32 transcriptome reference
External Lab, Community
29 MB
validated
Files This File Derives From
1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
IGVFFI1437MSLC
IGVFDS8648GJCE
tar
sparse gene count matrix
Ali Mortazavi, UCI
424 MB
validated
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI5345SNRS
h5ad
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
7.1 GB
validated
Attribution
Award
HG012077
Principal Investigator(s)
Lior Pachter
,
Kim Green
,
Grant MacGregor
,
Ali Mortazavi
,
Barbara Wold
Contact P.I.
Ali Mortazavi
Lab
Ali Mortazavi, UCI