IGVFFI1577SBWN

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI1577SBWN/",
4    "@type": [
5        "MatrixFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI1577SBWN",
10    "aliases": [
11        "ali-mortazavi:IGVF_B01_Subpool_8_filtered_denoised"
12    ],
13    "analysis_step_version": "/analysis-step-versions/84d923e3-9027-4aaf-a611-eff429b4348c/",
14    "assay_titles": [
15        "Parse SPLiT-seq"
16    ],
17    "audit": {
18        "NOT_COMPLIANT": [
19            {
20                "category": "missing file format specifications",
21                "detail": "Matrix file [IGVFFI1577SBWN](/matrix-files/IGVFFI1577SBWN/) has no `file_format_specifications`. Matrix files are expected to link to a file format specifications document describing the axes and layers of the file.",
22                "level": 50,
23                "level_name": "NOT_COMPLIANT",
24                "name": "audit_file_no_file_format_specifications",
25                "path": "/matrix-files/IGVFFI1577SBWN/"
26            }
27        ]
28    },
29    "award": {
30        "@id": "/awards/HG012077/",
31        "component": "mapping"
32    },
33    "content_summary": "cell by gene in sparse gene count matrix",
34    "content_type": "sparse gene count matrix",
35    "creation_timestamp": "2024-09-03T23:40:45.449393+00:00",
36    "derived_from": [
37        "/matrix-files/IGVFFI6420RRDI/"
38    ],
39    "file_format": "h5ad",
40    "file_set": {
41        "@id": "/analysis-sets/IGVFDS8648GJCE/",
42        "@type": [
43            "AnalysisSet",
44            "FileSet",
45            "Item"
46        ],
47        "accession": "IGVFDS8648GJCE",
48        "file_set_type": "intermediate analysis",
49        "samples": [
50            {
51                "@id": "/multiplexed-samples/IGVFSM2294BOOU/",
52                "@type": [
53                    "MultiplexedSample",
54                    "Sample",
55                    "Item"
56                ],
57                "accession": "IGVFSM2294BOOU",
58                "classifications": [
59                    "tissue",
60                    "multiplexed sample"
61                ],
62                "disease_terms": [],
63                "modifications": [],
64                "sample_terms": [
65                    {
66                        "@id": "/sample-terms/NTR_0000646/",
67                        "status": "released",
68                        "term_name": "left cerebral cortex"
69                    }
70                ],
71                "status": "released",
72                "summary": "multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples",
73                "taxa": "Mus musculus",
74                "treatments": []
75            }
76        ],
77        "status": "released",
78        "summary": "Parse SPLiT-seq: sparse gene count matrix"
79    },
80    "file_size": 946652428,
81    "gene_list_for": [],
82    "href": "/matrix-files/IGVFFI1577SBWN/@@download/IGVFFI1577SBWN.h5ad",
83    "input_file_for": [
84        "/matrix-files/IGVFFI5345SNRS/"
85    ],
86    "integrated_in": [],
87    "lab": {
88        "@id": "/labs/ali-mortazavi/",
89        "title": "Ali Mortazavi, UCI"
90    },
91    "loci_list_for": [],
92    "md5sum": "c5cd06753c24fa892e63b8006f8c9563",
93    "principal_dimension": "cell",
94    "quality_metrics": [],
95    "reference_files": [
96        "/reference-files/IGVFFI9282QLXO/",
97        "/reference-files/IGVFFI9744VSJF/"
98    ],
99    "release_timestamp": "2024-09-05T18:27:38.829242+00:00",
100    "s3_uri": "s3://igvf-files/2024/09/03/5e6608cf-1f79-4343-8709-0d0dd128d7e1/IGVFFI1577SBWN.h5ad",
101    "schema_version": "7",
102    "secondary_dimensions": [
103        "gene"
104    ],
105    "status": "released",
106    "submitted_by": {
107        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
108        "title": "Diane Trout"
109    },
110    "submitted_file_name": "Subpool_8_filtered_adata_denoised.h5ad",
111    "summary": "cell by gene in sparse gene count matrix",
112    "upload_status": "validated",
113    "uuid": "5e6608cf-1f79-4343-8709-0d0dd128d7e1",
114    "workflow": {
115        "@id": "/workflows/IGVFWF6241JYDF/",
116        "name": "UCI snRNA-seq workflow"
117    }
118}