IGVFFI1577SBWN

{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI1577SBWN/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI1577SBWN",
    "aliases": [
        "ali-mortazavi:IGVF_B01_Subpool_8_filtered_denoised"
    ],
    "analysis_step_version": "/analysis-step-versions/84d923e3-9027-4aaf-a611-eff429b4348c/",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "content_summary": "cell by gene sparse gene count matrix",
    "content_type": "sparse gene count matrix",
    "creation_timestamp": "2024-09-03T23:40:45.449393+00:00",
    "derived_from": [
        "/matrix-files/IGVFFI1437MSLC/"
    ],
    "dimension1": "cell",
    "dimension2": "gene",
    "file_format": "h5ad",
    "file_set": {
        "@id": "/analysis-sets/IGVFDS8648GJCE/",
        "accession": "IGVFDS8648GJCE",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/tissues/IGVFSM7772DGMA/",
                "accession": "IGVFSM7772DGMA",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, female, Mus musculus B6J (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM2279TQMZ/",
                "accession": "IGVFSM2279TQMZ",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, male, Mus musculus B6J (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM3421UUOE/",
                "accession": "IGVFSM3421UUOE",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, female, Mus musculus CASTJ (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM6969SYOD/",
                "accession": "IGVFSM6969SYOD",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, male, Mus musculus CASTJ (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM7094ZNGP/",
                "accession": "IGVFSM7094ZNGP",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, female, Mus musculus B6J (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM5782OIYL/",
                "accession": "IGVFSM5782OIYL",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, male, Mus musculus B6J (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM0447EABS/",
                "accession": "IGVFSM0447EABS",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, female, Mus musculus CASTJ (72 days)",
                "taxa": "Mus musculus"
            },
            {
                "@id": "/tissues/IGVFSM5157GFSA/",
                "accession": "IGVFSM5157GFSA",
                "classifications": [
                    "tissue"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/NTR_0000646/",
                        "term_name": "left cerebral cortex"
                    }
                ],
                "summary": "left cerebral cortex tissue, male, Mus musculus CASTJ (72 days)",
                "taxa": "Mus musculus"
            }
        ],
        "summary": "intermediate analysis of Parse SPLiT-seq data"
    },
    "file_size": 946652428,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI1577SBWN/@@download/IGVFFI1577SBWN.h5ad",
    "input_file_for": [
        "/matrix-files/IGVFFI5345SNRS/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "loci_list_for": [],
    "md5sum": "c5cd06753c24fa892e63b8006f8c9563",
    "reference_files": [
        "/reference-files/IGVFFI9282QLXO/",
        "/reference-files/IGVFFI9744VSJF/"
    ],
    "release_timestamp": "2024-09-05T18:27:38.829242+00:00",
    "s3_uri": "s3://igvf-files/2024/09/03/5e6608cf-1f79-4343-8709-0d0dd128d7e1/IGVFFI1577SBWN.h5ad",
    "schema_version": "6",
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "submitted_file_name": "Subpool_8_filtered_adata_denoised.h5ad",
    "summary": "cell by gene sparse gene count matrix",
    "upload_status": "validated",
    "uuid": "5e6608cf-1f79-4343-8709-0d0dd128d7e1"
}