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IGVFFI1253YWWF

released
validated
File Set
IGVFDS5153IDEO(single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq))
Summary
unfiltered cell by gene in sparse gene count matrix
Analysis Step Version
/analysis-step-versions/45d73e29-280a-4faf-9762-c1b4c655b689/
File Format
h5ad
Content Type
sparse gene count matrix
Content Summary
cell by gene in sparse gene count matrix
Aliases
buenrostro-bernstein:surya-mouse-colitis-adenoma-tissue-rna-matrix
md5sum
e849caf3d0c53f707d4546baafa49bd1
File Size
10 MB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/processed-data/mouse_adenoma_tissue.RNA.raw_counts.h5
Checkfiles Version
v17
Attribution
Jason Buenrostro, Broad

Matrix Details

Principal Dimension
cell
Secondary Dimensions
gene

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Specification of matrix h5 generated by https://github.com/masai1116/SHARE-seq-alignmentV2
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6J colon tissue

Files This File Derives From

4 items
fastq
reads
Jason Buenrostro, Broad
6.2 GB
validated
fastq
reads
Jason Buenrostro, Broad
3.0 GB
validated
fastq
reads
Jason Buenrostro, Broad
6.1 GB
validated
fastq
reads
Jason Buenrostro, Broad
3.5 GB
validated