IGVFFI1253YWWF

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/matrix-files/IGVFFI1253YWWF/",
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10    "aliases": [
11        "buenrostro-bernstein:surya-mouse-colitis-adenoma-tissue-rna-matrix"
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13    "analysis_step_version": "/analysis-step-versions/45d73e29-280a-4faf-9762-c1b4c655b689/",
14    "assay_titles": [
15        "SHARE-seq"
16    ],
17    "audit": {
18        "INTERNAL_ACTION": [
19            {
20                "category": "mismatched status",
21                "detail": "Released matrix file [IGVFFI1253YWWF](/matrix-files/IGVFFI1253YWWF/) has in progress subobject reference file [IGVFFI4319MSMI](/reference-files/IGVFFI4319MSMI/).",
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25                "path": "/matrix-files/IGVFFI1253YWWF/"
26            },
27            {
28                "category": "mismatched status",
29                "detail": "Released matrix file [IGVFFI1253YWWF](/matrix-files/IGVFFI1253YWWF/) has in progress subobject reference file [IGVFFI6909ZBPJ](/reference-files/IGVFFI6909ZBPJ/).",
30                "level": 30,
31                "level_name": "INTERNAL_ACTION",
32                "name": "audit_item_status",
33                "path": "/matrix-files/IGVFFI1253YWWF/"
34            }
35        ]
36    },
37    "award": {
38        "@id": "/awards/HG011986/",
39        "component": "mapping"
40    },
41    "checkfiles_version": "v17",
42    "content_summary": "cell by gene in sparse gene count matrix",
43    "content_type": "sparse gene count matrix",
44    "creation_timestamp": "2025-03-06T16:38:17.085561+00:00",
45    "derived_from": [
46        "/sequence-files/IGVFFI2447KHFY/",
47        "/sequence-files/IGVFFI0907KVEO/",
48        "/sequence-files/IGVFFI8022FSUK/",
49        "/sequence-files/IGVFFI7944LOLC/"
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63        "file_set_type": "intermediate analysis",
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66                "@id": "/tissues/IGVFSM6844DNNZ/",
67                "@type": [
68                    "Tissue",
69                    "Biosample",
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71                    "Item"
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74                "classifications": [
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79                        "@id": "/sample-terms/UBERON_0001155/",
80                        "status": "released",
81                        "term_name": "colon"
82                    }
83                ],
84                "status": "released",
85                "summary": "Mus musculus C57BL/6J colon tissue",
86                "taxa": "Mus musculus"
87            }
88        ],
89        "status": "released",
90        "summary": "single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq): fragments, sparse gene count matrix"
91    },
92    "file_size": 10379994,
93    "filtered": false,
94    "gene_list_for": [],
95    "href": "/matrix-files/IGVFFI1253YWWF/@@download/IGVFFI1253YWWF.h5ad",
96    "input_file_for": [],
97    "integrated_in": [],
98    "lab": {
99        "@id": "/labs/jason-buenrostro/",
100        "title": "Jason Buenrostro, Broad"
101    },
102    "loci_list_for": [],
103    "md5sum": "e849caf3d0c53f707d4546baafa49bd1",
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108        "/reference-files/IGVFFI4319MSMI/"
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110    "release_timestamp": "2025-03-26T19:25:46.484096+00:00",
111    "s3_uri": "s3://igvf-files/2025/03/06/a07c41fc-1078-4a83-b0a8-beb9b9c4ed32/IGVFFI1253YWWF.h5ad",
112    "schema_version": "7",
113    "secondary_dimensions": [
114        "gene"
115    ],
116    "status": "released",
117    "submitted_by": {
118        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
119        "title": "Siddarth Wekhande"
120    },
121    "submitted_file_name": "gs://sw-igvf-submission/surya-mouse-colitis/processed-data/mouse_adenoma_tissue.RNA.raw_counts.h5",
122    "summary": "unfiltered cell by gene in sparse gene count matrix",
123    "upload_status": "validated",
124    "uuid": "a07c41fc-1078-4a83-b0a8-beb9b9c4ed32",
125    "workflow": {
126        "@id": "/workflows/IGVFWF0507XZOR/",
127        "name": "SHARE-seq-alignmentV2",
128        "uniform_pipeline": false
129    }
130}