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IGVFFI0102ONBY

released
validated
File Set
IGVFDS4066YEFI(CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus)
Summary
genomic position by genomic position in contact matrix
Analysis Step Version
/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/
File Format
mcool
Content Type
contact matrix
Content Summary
genomic position by genomic position in contact matrix
Aliases
charles-gersbach:matrix-file-crispra-region3-mouse-hl1-targeted-hicar-rep2-mcool
md5sum
c79900e68843ac5e1244a083740bf713
File Size
52 MB
Submitted File Name
/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/mouse/HL1_TA446_CA_2_ctrl.1000.mcool
Checkfiles Version
Legacy version of checkfiles
Attribution
Charles Gersbach, Duke

Matrix Details

Principal Dimension
genomic position
Secondary Dimensions
genomic position

File Format Specifications

1 item
Page
Description
Type
Download
Standardized File Format
Preview
Contact matrix mcool files
file format specification

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Mus musculus C57BL/6J (female) HL-1 cell line transduced (lentivirus) with a guide library

Reference Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
fasta
genome reference
GRCh38 genome reference
External Lab, Community
984 MB
validated

Files This File Derives From

2 items
fastq
reads
Charles Gersbach, Duke
1.3 GB
validated
fastq
reads
Charles Gersbach, Duke
1.1 GB
validated

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
cool
contact matrix
genomic position by genomic position in contact matrix
Charles Gersbach, Duke
12 MB
validated