IGVFFI0102ONBY

{
    "@context": "/terms/",
    "@id": "/matrix-files/IGVFFI0102ONBY/",
    "@type": [
        "MatrixFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI0102ONBY",
    "aliases": [
        "charles-gersbach:matrix-file-crispra-region3-mouse-hl1-targeted-hicar-rep2-mcool"
    ],
    "analysis_step_version": "/analysis-step-versions/32996b0a-9d1f-4cfe-9e75-1f62f1f93d60/",
    "assay_titles": [
        "HiCAR"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012053/",
        "component": "functional characterization"
    },
    "content_summary": "genomic position by genomic position in contact matrix",
    "content_type": "contact matrix",
    "creation_timestamp": "2024-11-07T16:07:38.222975+00:00",
    "derived_from": [
        "/sequence-files/IGVFFI9667BHUU/",
        "/sequence-files/IGVFFI7660JFBM/"
    ],
    "file_format": "mcool",
    "file_format_specifications": [
        "/documents/cb4a6813-68a9-4aff-af23-7d78a04dfc58/"
    ],
    "file_set": {
        "@id": "/analysis-sets/IGVFDS4066YEFI/",
        "accession": "IGVFDS4066YEFI",
        "file_set_type": "intermediate analysis",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM1004RIDZ/",
                "accession": "IGVFSM1004RIDZ",
                "classifications": [
                    "cell line"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0022835/",
                        "status": "released",
                        "term_name": "HL-1"
                    }
                ],
                "status": "released",
                "summary": "HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library",
                "taxa": "Mus musculus"
            }
        ],
        "status": "released",
        "summary": "HiCAR: contact matrix"
    },
    "file_size": 52062245,
    "gene_list_for": [],
    "href": "/matrix-files/IGVFFI0102ONBY/@@download/IGVFFI0102ONBY.mcool",
    "input_file_for": [
        "/matrix-files/IGVFFI4765CAWH/"
    ],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/charles-gersbach/",
        "title": "Charles Gersbach, Duke"
    },
    "loci_list_for": [],
    "md5sum": "c79900e68843ac5e1244a083740bf713",
    "principal_dimension": "genomic position",
    "reference_files": [
        "/reference-files/IGVFFI6815WBWB/"
    ],
    "release_timestamp": "2024-12-13T19:43:27.727375+00:00",
    "s3_uri": "s3://igvf-files/2024/11/07/a260c6e8-6b3e-4bce-864b-54d01ff7feb6/IGVFFI0102ONBY.mcool",
    "schema_version": "7",
    "secondary_dimensions": [
        "genomic position"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
        "title": "Ruhi Rai"
    },
    "submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/output/cooler/mouse/HL1_TA446_CA_2_ctrl.1000.mcool",
    "summary": "genomic position by genomic position in contact matrix",
    "upload_status": "validated",
    "uuid": "a260c6e8-6b3e-4bce-864b-54d01ff7feb6"
}