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INDEXED
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ConfigurationFile
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IGVFFI9356OMQM
IGVFFI9356OMQM
released
validated
Json view
File Set
IGVFDS5111SPGA
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI3571TKGA, IGVFFI3018VEYP, IGVFFI9779AEQR, IGVFFI5522YJDZ
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp2_rna_10x1_NGS2
md5sum
64b94c7e4569053863ceb0c0166c2afd
Content MD5sum
a2856bfff275bf00a39da8a63aa2379a
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp2_rna_10x1_NGS2_rna_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3018VEYP
fastq
reads
1
Illumina NovaSeq X
2257H3LT3
8
1.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3571TKGA
fastq
reads
1
Read 2
Illumina NovaSeq X
2257H3LT3
8
14 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5522YJDZ
fastq
reads
1
Read 1
Illumina NovaSeq X
2257H3LT3
8
6.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9779AEQR
fastq
reads
1
Illumina NovaSeq X
2257H3LT3
8
1.7 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3646QLDO
MultiplexedSample
TeloHAEC
multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples