IGVFFI9356OMQM

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI9356OMQM/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9356OMQM",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp2_rna_10x1_NGS2"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "a2856bfff275bf00a39da8a63aa2379a",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:35:55.461577+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS5111SPGA/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS5111SPGA",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0003109/",
36            "term_name": "single-nucleus RNA sequencing assay"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/multiplexed-samples/IGVFSM3646QLDO/",
42                "@type": [
43                    "MultiplexedSample",
44                    "Sample",
45                    "Item"
46                ],
47                "accession": "IGVFSM3646QLDO",
48                "classifications": [
49                    "cell line",
50                    "multiplexed sample"
51                ],
52                "disease_terms": [],
53                "modifications": [],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/NTR_0000753/",
57                        "status": "released",
58                        "term_name": "TeloHAEC"
59                    }
60                ],
61                "status": "released",
62                "summary": "multiplexed sample: Homo sapiens (female) TeloHAEC cell line treated with 10 ng/mL tumor necrosis factor alpha for 4 hours; Homo sapiens (female) TeloHAEC cell line; ... and 7 more samples",
63                "taxa": "Homo sapiens",
64                "treatments": [
65                    {
66                        "@id": "/treatments/d2d49540-dd91-49e2-b877-ce9aa0af8bb0/",
67                        "purpose": "perturbation",
68                        "status": "in progress",
69                        "summary": "Treatment of 10 ng/mL tumor necrosis factor alpha for 4 hours",
70                        "treatment_term_name": "tumor necrosis factor alpha"
71                    },
72                    {
73                        "@id": "/treatments/de8a9e87-d0e1-4ecb-bc9d-08e61b4ff368/",
74                        "purpose": "perturbation",
75                        "status": "in progress",
76                        "summary": "Treatment of 10 ng/mL tumor necrosis factor alpha for 1 day",
77                        "treatment_term_name": "tumor necrosis factor alpha"
78                    }
79                ]
80            }
81        ],
82        "status": "released",
83        "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
84    },
85    "file_size": 1392,
86    "gene_list_for": [],
87    "href": "/configuration-files/IGVFFI9356OMQM/@@download/IGVFFI9356OMQM.yaml.gz",
88    "input_file_for": [],
89    "integrated_in": [],
90    "lab": {
91        "@id": "/labs/ansuman-satpathy/",
92        "title": "Ansuman Satpathy, Stanford"
93    },
94    "loci_list_for": [],
95    "md5sum": "64b94c7e4569053863ceb0c0166c2afd",
96    "quality_metrics": [],
97    "release_timestamp": "2025-03-07T01:10:45.008844+00:00",
98    "s3_uri": "s3://igvf-files/2024/09/18/512e1e60-d6fe-4fdc-953b-1e041121364a/IGVFFI9356OMQM.yaml.gz",
99    "schema_version": "7",
100    "seqspec_of": [
101        "/sequence-files/IGVFFI3571TKGA/",
102        "/sequence-files/IGVFFI3018VEYP/",
103        "/sequence-files/IGVFFI9779AEQR/",
104        "/sequence-files/IGVFFI5522YJDZ/"
105    ],
106    "status": "released",
107    "submitted_by": {
108        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
109        "title": "Christopher Mcginnis"
110    },
111    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp2_rna_10x1_NGS2_rna_seqspec.yaml.gz",
112    "summary": "seqspec of IGVFFI3571TKGA, IGVFFI3018VEYP, IGVFFI9779AEQR, IGVFFI5522YJDZ",
113    "upload_status": "validated",
114    "uuid": "512e1e60-d6fe-4fdc-953b-1e041121364a",
115    "validate_onlist_files": true
116}