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IGVFFI9044QYNE

released
validation exempted
File Set
IGVFDS5846SFBO(lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide)
Summary
seqspec of IGVFFI8723OKOI, IGVFFI6582NYXF, IGVFFI7125POHK, IGVFFI5041KLXZ, IGVFFI8371STUX, IGVFFI3111PIZV, IGVFFI5564OOVA, IGVFFI1670MEFP, IGVFFI0480AEXF
File Format
yaml
Content Type
seqspec
md5sum
a148e19ef51ccc0b4133f3501e375501
Content MD5sum
5699df133b9413c9973597bab24ddfc6
File Size
1.6 KB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/count/seqspec/IGVF_shendure_progReg_HepG2_count_rep2_rna.yaml.gz"
Checkfiles Version
No version due to exemption
Submitter Comment
"This file was previously validated by legacy checkfiles and is seqspec v0.3.0. It is now local checkfiles V17 validated, patched to be validation exempted as a part of portal-wide seqspec updating effort."
Attribution
Nadav Ahituv, UCSF

seqspec File Of

9 items
Read Names
fastq
reads
3
Barcode reverse
2.0 GB
Nadav Ahituv, UCSF
validated
fastq
reads
3
UMI
2.1 GB
Nadav Ahituv, UCSF
validated
fastq
reads
2
Barcode reverse
1.3 GB
Nadav Ahituv, UCSF
validated
fastq
reads
2
Barcode forward
1.3 GB
Nadav Ahituv, UCSF
validated
fastq
reads
3
Barcode forward
2.0 GB
Nadav Ahituv, UCSF
validated
fastq
reads
1
UMI
2.5 GB
Nadav Ahituv, UCSF
validated
fastq
reads
1
Barcode reverse
2.4 GB
Nadav Ahituv, UCSF
validated
fastq
reads
2
UMI
1.4 GB
Nadav Ahituv, UCSF
validated
fastq
reads
1
Barcode forward
2.4 GB
Nadav Ahituv, UCSF
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
tsv
barcode to element mapping
Nadav Ahituv, UCSF
728 MB
validated