IGVFFI9044QYNE

released
validation exempted
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI9044QYNE/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9044QYNE",
10    "assay_titles": [
11        "lentiMPRA"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG011966/",
16        "component": "functional characterization"
17    },
18    "content_md5sum": "5699df133b9413c9973597bab24ddfc6",
19    "content_type": "seqspec",
20    "creation_timestamp": "2024-12-19T12:24:56.103667+00:00",
21    "derived_from": [
22        "/tabular-files/IGVFFI6803EINC/"
23    ],
24    "description": "Sequence specification of HepG2 RNA counts",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS5846SFBO/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS5846SFBO",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002675/",
36            "term_name": "massively parallel reporter assay"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/in-vitro-systems/IGVFSM9009DVDG/",
42                "@type": [
43                    "InVitroSystem",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM9009DVDG",
49                "classifications": [
50                    "cell line",
51                    "pooled cell specimen"
52                ],
53                "sample_terms": [
54                    {
55                        "@id": "/sample-terms/EFO_0001187/",
56                        "status": "released",
57                        "term_name": "HepG2"
58                    }
59                ],
60                "status": "released",
61                "summary": "Homo sapiens (male) HepG2 pooled cell specimen transduced (lentivirus) with a reporter library",
62                "taxa": "Homo sapiens"
63            }
64        ],
65        "status": "released",
66        "summary": "lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
67    },
68    "file_size": 1612,
69    "gene_list_for": [],
70    "href": "/configuration-files/IGVFFI9044QYNE/@@download/IGVFFI9044QYNE.yaml.gz",
71    "input_file_for": [],
72    "integrated_in": [],
73    "lab": {
74        "@id": "/labs/nadav-ahituv/",
75        "title": "Nadav Ahituv, UCSF"
76    },
77    "loci_list_for": [],
78    "md5sum": "a148e19ef51ccc0b4133f3501e375501",
79    "quality_metrics": [],
80    "release_timestamp": "2025-01-30T17:47:27.596540+00:00",
81    "s3_uri": "s3://igvf-files/2024/12/19/ccadbbb9-b7f7-4dc8-b15c-763e9e00cc08/IGVFFI9044QYNE.yaml.gz",
82    "schema_version": "7",
83    "seqspec_of": [
84        "/sequence-files/IGVFFI8723OKOI/",
85        "/sequence-files/IGVFFI6582NYXF/",
86        "/sequence-files/IGVFFI7125POHK/",
87        "/sequence-files/IGVFFI5041KLXZ/",
88        "/sequence-files/IGVFFI8371STUX/",
89        "/sequence-files/IGVFFI3111PIZV/",
90        "/sequence-files/IGVFFI5564OOVA/",
91        "/sequence-files/IGVFFI1670MEFP/",
92        "/sequence-files/IGVFFI0480AEXF/"
93    ],
94    "status": "released",
95    "submitted_by": {
96        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
97        "title": "Max Schubach"
98    },
99    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/count/seqspec/IGVF_shendure_progReg_HepG2_count_rep2_rna.yaml.gz\"",
100    "submitter_comment": "\"This file was previously validated by legacy checkfiles and is seqspec v0.3.0. It is now local checkfiles V17 validated, patched to be validation exempted as a part of portal-wide seqspec updating effort.\"",
101    "summary": "seqspec of IGVFFI8723OKOI, IGVFFI6582NYXF, IGVFFI7125POHK, IGVFFI5041KLXZ, IGVFFI8371STUX, IGVFFI3111PIZV, IGVFFI5564OOVA, IGVFFI1670MEFP, IGVFFI0480AEXF",
102    "upload_status": "validation exempted",
103    "uuid": "ccadbbb9-b7f7-4dc8-b15c-763e9e00cc08",
104    "validate_onlist_files": false
105}