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INDEXED
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ConfigurationFile
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IGVFFI7509TWYF
IGVFFI7509TWYF
released
validated
Json view
File Set
IGVFDS1427CODJ
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI2427ACWP, IGVFFI2590TULH, IGVFFI4076GAUO, IGVFFI7773BPEF
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp18_atac_10x1_NGS1
md5sum
f6e6dff3c9e82e07ff74f132a983c273
Content MD5sum
ab62781a71ed345b7d5141a6a6927404
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp18_atac_10x1_NGS1_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG011972
—
Jesse Engreitz
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2427ACWP
fastq
reads
1
Read 1
Illumina NovaSeq X
22FL7YLT4
1
22 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2590TULH
fastq
reads
1
Barcode index
Illumina NovaSeq X
22FL7YLT4
1
13 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4076GAUO
fastq
reads
1
Read 2
Illumina NovaSeq X
22FL7YLT4
1
22 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7773BPEF
fastq
reads
1
Illumina NovaSeq X
22FL7YLT4
1
5.5 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4392KEFB
MultiplexedSample
HCT116
,
HUDEP-2
,
IMR-90
,
MCF-7
,
SK-N-SH
,
TeloHAEC
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples