IGVFFI7509TWYF

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI7509TWYF/",
    "@type": [
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        "File",
        "Item"
    ],
    "accession": "IGVFFI7509TWYF",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp18_atac_10x1_NGS1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "ab62781a71ed345b7d5141a6a6927404",
    "content_type": "seqspec",
    "creation_timestamp": "2025-02-26T01:45:01.953963+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1427CODJ/",
        "accession": "IGVFDS1427CODJ",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM4392KEFB/",
                "accession": "IGVFSM4392KEFB",
                "classifications": [
                    "cell line",
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0001196/",
                        "status": "released",
                        "term_name": "IMR-90"
                    },
                    {
                        "@id": "/sample-terms/EFO_0001203/",
                        "status": "released",
                        "term_name": "MCF-7"
                    },
                    {
                        "@id": "/sample-terms/EFO_0002824/",
                        "status": "released",
                        "term_name": "HCT116"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003072/",
                        "status": "released",
                        "term_name": "SK-N-SH"
                    },
                    {
                        "@id": "/sample-terms/EFO_0022838/",
                        "status": "released",
                        "term_name": "HUDEP-2"
                    },
                    {
                        "@id": "/sample-terms/NTR_0000753/",
                        "status": "released",
                        "term_name": "TeloHAEC"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples",
                "taxa": "Homo sapiens",
                "treatments": [
                    {
                        "@id": "/treatments/ff03c6ff-c1f5-4b47-bd9d-62f22d5794c5/",
                        "purpose": "perturbation",
                        "status": "in progress",
                        "summary": "Treatment of 3 μM Yoda1 for 4 hours",
                        "treatment_term_name": "Yoda1"
                    }
                ]
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1379,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI7509TWYF/@@download/IGVFFI7509TWYF.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "f6e6dff3c9e82e07ff74f132a983c273",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:17:58.215816+00:00",
    "s3_uri": "s3://igvf-files/2025/02/26/52f9f868-b3fa-43ea-ae32-5d19f99ccbb6/IGVFFI7509TWYF.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI2427ACWP/",
        "/sequence-files/IGVFFI2590TULH/",
        "/sequence-files/IGVFFI4076GAUO/",
        "/sequence-files/IGVFFI7773BPEF/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp18_atac_10x1_NGS1_atac_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI2427ACWP, IGVFFI2590TULH, IGVFFI4076GAUO, IGVFFI7773BPEF",
    "upload_status": "validated",
    "uuid": "52f9f868-b3fa-43ea-ae32-5d19f99ccbb6",
    "validate_onlist_files": true
}