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INDEXED
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ConfigurationFile
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IGVFFI6528VHZP
IGVFFI6528VHZP
released
validated
Json view
File Set
IGVFDS2684OSWL
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI5809HGKP, IGVFFI0605ORIY, IGVFFI8903GQTU, IGVFFI7090WVNY
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp1_rna_10x2_NGS1
md5sum
bd8966d89c4581c2b725b6fe47c110e9
Content MD5sum
79d5c09b4f0ae11c3e22630918fba229
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp1_rna_10x2_NGS1_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0605ORIY
fastq
reads
1
Illumina NovaSeq X
2257H3LT3
7
2.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5809HGKP
fastq
reads
1
Illumina NovaSeq X
2257H3LT3
7
2.7 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7090WVNY
fastq
reads
1
Read 2
Illumina NovaSeq X
2257H3LT3
7
24 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8903GQTU
fastq
reads
1
Read 1
Illumina NovaSeq X
2257H3LT3
7
11 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM8645VILQ
MultiplexedSample
HAP-1
,
HL-60
,
HUDEP-2
,
K562
,
U2OS
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford