IGVFFI6528VHZP

released
validated
{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI6528VHZP/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI6528VHZP",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp1_rna_10x2_NGS1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "79d5c09b4f0ae11c3e22630918fba229",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:21:29.409633+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS2684OSWL/",
        "accession": "IGVFDS2684OSWL",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM8645VILQ/",
                "accession": "IGVFSM8645VILQ",
                "classifications": [
                    "cell line",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0002067/",
                        "status": "released",
                        "term_name": "K562"
                    },
                    {
                        "@id": "/sample-terms/EFO_0002793/",
                        "status": "released",
                        "term_name": "HL-60"
                    },
                    {
                        "@id": "/sample-terms/EFO_0002869/",
                        "status": "released",
                        "term_name": "U2OS"
                    },
                    {
                        "@id": "/sample-terms/EFO_0007598/",
                        "status": "released",
                        "term_name": "HAP-1"
                    },
                    {
                        "@id": "/sample-terms/EFO_0022838/",
                        "status": "released",
                        "term_name": "HUDEP-2"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
    },
    "file_size": 1394,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI6528VHZP/@@download/IGVFFI6528VHZP.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "bd8966d89c4581c2b725b6fe47c110e9",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:10:39.181215+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/511660cb-49c4-4752-b233-3bb6d915aea6/IGVFFI6528VHZP.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI5809HGKP/",
        "/sequence-files/IGVFFI0605ORIY/",
        "/sequence-files/IGVFFI8903GQTU/",
        "/sequence-files/IGVFFI7090WVNY/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp1_rna_10x2_NGS1_rna_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI5809HGKP, IGVFFI0605ORIY, IGVFFI8903GQTU, IGVFFI7090WVNY",
    "upload_status": "validated",
    "uuid": "511660cb-49c4-4752-b233-3bb6d915aea6",
    "validate_onlist_files": true
}