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IGVFFI6118CRVV
IGVFFI6118CRVV
released
validated
Json view
File Set
IGVFDS4170WANT
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI4339WSEZ, IGVFFI9095DTVE, IGVFFI0726OIUU, IGVFFI0348NYEX
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp18_rna_10x4_NGS1
md5sum
6d47230ff3b5e943b98a556c5b3db4ae
Content MD5sum
f60d0556c1f44eda88a0ad221666d2dd
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp18_rna_10x4_NGS1_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0348NYEX
fastq
reads
1
Illumina NovaSeq X
22FL7YLT4
1
7.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI0726OIUU
fastq
reads
1
Illumina NovaSeq X
22FL7YLT4
1
8.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4339WSEZ
fastq
reads
1
Read 1
Illumina NovaSeq X
22FL7YLT4
1
113 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9095DTVE
fastq
reads
1
Read 2
Illumina NovaSeq X
22FL7YLT4
1
93 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3125MLLP
MultiplexedSample
HCT116
,
HUDEP-2
,
IMR-90
,
MCF-7
,
SK-N-SH
,
TeloHAEC
multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford