{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI6118CRVV/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI6118CRVV",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp18_rna_10x4_NGS1"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"checkfiles_version": "v16",
"content_md5sum": "f60d0556c1f44eda88a0ad221666d2dd",
"content_type": "seqspec",
"creation_timestamp": "2025-02-26T01:45:49.253062+00:00",
"file_format": "yaml",
"file_set": {
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"accession": "IGVFDS4170WANT",
"file_set_type": "experimental data",
"samples": [
{
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"accession": "IGVFSM3125MLLP",
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0001196/",
"status": "released",
"term_name": "IMR-90"
},
{
"@id": "/sample-terms/EFO_0001203/",
"status": "released",
"term_name": "MCF-7"
},
{
"@id": "/sample-terms/EFO_0002824/",
"status": "released",
"term_name": "HCT116"
},
{
"@id": "/sample-terms/EFO_0003072/",
"status": "released",
"term_name": "SK-N-SH"
},
{
"@id": "/sample-terms/EFO_0022838/",
"status": "released",
"term_name": "HUDEP-2"
},
{
"@id": "/sample-terms/NTR_0000753/",
"status": "released",
"term_name": "TeloHAEC"
}
],
"status": "released",
"summary": "multiplexed sample: IMR-90 cell line, female, Homo sapiens; MCF-7 cell line, female, Homo sapiens; ... and 17 more samples",
"taxa": "Homo sapiens",
"treatments": [
{
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"purpose": "perturbation",
"status": "in progress",
"summary": "Treatment of 3 μM Yoda1 for 4 hours",
"treatment_term_name": "Yoda1"
}
]
}
],
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
"file_size": 1397,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI6118CRVV/@@download/IGVFFI6118CRVV.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "6d47230ff3b5e943b98a556c5b3db4ae",
"quality_metrics": [],
"release_timestamp": "2025-03-07T01:18:27.596375+00:00",
"s3_uri": "s3://igvf-files/2025/02/26/91cd625c-4a44-41d8-920b-6f133920d88b/IGVFFI6118CRVV.yaml.gz",
"schema_version": "7",
"seqspec_of": [
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"/sequence-files/IGVFFI9095DTVE/",
"/sequence-files/IGVFFI0726OIUU/",
"/sequence-files/IGVFFI0348NYEX/"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp18_rna_10x4_NGS1_rna_seqspec.yaml.gz",
"summary": "seqspec of IGVFFI4339WSEZ, IGVFFI9095DTVE, IGVFFI0726OIUU, IGVFFI0348NYEX",
"upload_status": "validated",
"uuid": "91cd625c-4a44-41d8-920b-6f133920d88b",
"validate_onlist_files": true
}