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IGVFFI5603KQOW

released
validated
File Set
IGVFDS0508ERUQ(scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
seqspec of IGVFFI8600XJSP, IGVFFI2492BPYV, IGVFFI0662BBNP
File Format
yaml
Content Type
seqspec
Aliases
jay-shendure:CRISPRa_singlecell_K562_VPR_10Xlane2_seqlane2_exprs_seqspec
md5sum
1b429bd9236bd47d28a36629709cf8e0
Content MD5sum
c5c77880879ef9e121d1afa58848c194
File Size
1.3 KB
Submitted File Name
/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/CRISPRa/CRISPRa_IGVFDS0508ERUQ_2_exprs_seqspec_v3.yaml.gz
Checkfiles Version
v20
Attribution
Jay Shendure, UW

seqspec File Of

3 items
Read Names
fastq
reads
1
Read 2
AAAHG2HHV
2
6.6 GB
Jay Shendure, UW
validated
fastq
reads
1
Read 1
AAAHG2HHV
2
3.1 GB
Jay Shendure, UW
validated
fastq
reads
1
AAAHG2HHV
2
898 MB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane2) modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library