Home

IGVFFI4842GDBV

released
validated
File Set
IGVFDS4621HUKP(gRNA sequencing for scCRISPR activation screen integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
seqspec of IGVFFI7439CGLC, IGVFFI1163CNBZ, IGVFFI2138EWHH
File Format
yaml
Content Type
seqspec
Aliases
jay-shendure:CRISPRa_singlecell_K562_VPR_10Xlane1_seqlane2_CS1_seqspec
md5sum
b3616b3e431ac3b402a245acdbb9f904
Content MD5sum
98ff18eff02e211473336bc816492015
File Size
1.4 KB
Submitted File Name
/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/CRISPRa/CRISPRa_IGVFDS4621HUKP_2_CS1_seqspec_v3.yaml.gz
Checkfiles Version
v20
Attribution
Jay Shendure, UW

seqspec File Of

3 items
Read Names
fastq
reads
1
Read 1
AAAHG2HHV
2
757 MB
Jay Shendure, UW
validated
fastq
reads
1
Read 2
AAAHG2HHV
2
1.4 GB
Jay Shendure, UW
validated
fastq
reads
1
AAAHG2HHV
2
274 MB
Jay Shendure, UW
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line (cellular sub pool: 10Xlane1) modified with CRISPRa Sp-dCas9-VP64-p65-Rta (VPR), transfected with a guide library